miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12034 3' -57.9 NC_003278.1 + 1662 0.72 0.17482
Target:  5'- aGCCGCgACgACCacUCGCCGGCCuGcgGg -3'
miRNA:   3'- -CGGCGgUG-UGGa-AGCGGUCGGuCuaC- -5'
12034 3' -57.9 NC_003278.1 + 4605 0.69 0.28171
Target:  5'- cGUCGCCauagGCGCCgaacucaccaGCCGGCCAGGc- -3'
miRNA:   3'- -CGGCGG----UGUGGaag-------CGGUCGGUCUac -5'
12034 3' -57.9 NC_003278.1 + 4744 0.67 0.372357
Target:  5'- gGCCugGCCAuCACCgacuccccCGCCAGCCuGGGUa -3'
miRNA:   3'- -CGG--CGGU-GUGGaa------GCGGUCGG-UCUAc -5'
12034 3' -57.9 NC_003278.1 + 5308 0.75 0.104981
Target:  5'- cGCCGuCCAgACCUUCGCCgucgAGCCGaGUGu -3'
miRNA:   3'- -CGGC-GGUgUGGAAGCGG----UCGGUcUAC- -5'
12034 3' -57.9 NC_003278.1 + 5443 0.7 0.229537
Target:  5'- cGUCaGCgGCACCaUCGCCAGCCGuaccGAUa -3'
miRNA:   3'- -CGG-CGgUGUGGaAGCGGUCGGU----CUAc -5'
12034 3' -57.9 NC_003278.1 + 6469 0.72 0.165374
Target:  5'- cGCUGCCuuGCCUUCGUCGGaUUGGAUGu -3'
miRNA:   3'- -CGGCGGugUGGAAGCGGUC-GGUCUAC- -5'
12034 3' -57.9 NC_003278.1 + 6933 0.67 0.381355
Target:  5'- cCCGCCGCACUUgUCGUgCAGUUGGAUc -3'
miRNA:   3'- cGGCGGUGUGGA-AGCG-GUCGGUCUAc -5'
12034 3' -57.9 NC_003278.1 + 6968 0.66 0.448245
Target:  5'- aCC-CCGCGCCc-CGCCGGCUGGGg- -3'
miRNA:   3'- cGGcGGUGUGGaaGCGGUCGGUCUac -5'
12034 3' -57.9 NC_003278.1 + 8399 0.66 0.418767
Target:  5'- uCCGCCGCAgCgucucguugcUCGCCAGCCu---- -3'
miRNA:   3'- cGGCGGUGUgGa---------AGCGGUCGGucuac -5'
12034 3' -57.9 NC_003278.1 + 8791 0.69 0.290525
Target:  5'- uGCUGCagaACGCCgaccucgUCGCC-GCCGGAg- -3'
miRNA:   3'- -CGGCGg--UGUGGa------AGCGGuCGGUCUac -5'
12034 3' -57.9 NC_003278.1 + 9035 0.67 0.370575
Target:  5'- aCCGCCgaGCACCagCGCCuggcgaacgcucGCCAGAUc -3'
miRNA:   3'- cGGCGG--UGUGGaaGCGGu-----------CGGUCUAc -5'
12034 3' -57.9 NC_003278.1 + 9080 0.72 0.165374
Target:  5'- aCCGCCGC-CCUggaGUCGGCCAGuUGg -3'
miRNA:   3'- cGGCGGUGuGGAag-CGGUCGGUCuAC- -5'
12034 3' -57.9 NC_003278.1 + 12559 0.72 0.184744
Target:  5'- aCCgGCCAgaACCUg-GCCGGCCAGGUGc -3'
miRNA:   3'- cGG-CGGUg-UGGAagCGGUCGGUCUAC- -5'
12034 3' -57.9 NC_003278.1 + 13516 0.68 0.305694
Target:  5'- cGCCGCCACACCagcccaggCGCCcuacugcaCCGGAa- -3'
miRNA:   3'- -CGGCGGUGUGGaa------GCGGuc------GGUCUac -5'
12034 3' -57.9 NC_003278.1 + 13676 0.69 0.275953
Target:  5'- -gCGCCAgGgCUUCGgCGGCCAGGc- -3'
miRNA:   3'- cgGCGGUgUgGAAGCgGUCGGUCUac -5'
12034 3' -57.9 NC_003278.1 + 14107 0.71 0.195162
Target:  5'- cGUCGCCAgGCCgUgGCgGGCCAGGa- -3'
miRNA:   3'- -CGGCGGUgUGGaAgCGgUCGGUCUac -5'
12034 3' -57.9 NC_003278.1 + 14201 0.66 0.409206
Target:  5'- cGCUGCCGCGCCgaUGUCGGUgagCAGGc- -3'
miRNA:   3'- -CGGCGGUGUGGaaGCGGUCG---GUCUac -5'
12034 3' -57.9 NC_003278.1 + 14643 0.66 0.409206
Target:  5'- uCCGCgGCaACCUUCGCCguccccAGUCcuGGGUGg -3'
miRNA:   3'- cGGCGgUG-UGGAAGCGG------UCGG--UCUAC- -5'
12034 3' -57.9 NC_003278.1 + 14687 0.75 0.104981
Target:  5'- cGCCGaCCAgGCCgUUGCCGGCCAGc-- -3'
miRNA:   3'- -CGGC-GGUgUGGaAGCGGUCGGUCuac -5'
12034 3' -57.9 NC_003278.1 + 15636 0.67 0.363504
Target:  5'- cGUCGCguUGCCUUCGC-GGUCGGAUa -3'
miRNA:   3'- -CGGCGguGUGGAAGCGgUCGGUCUAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.