miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12097 5' -56.9 NC_003309.1 + 45272 0.66 0.650099
Target:  5'- aGCGGAUuugGUCGaAUGCCGGcCGCCgCGu -3'
miRNA:   3'- cUGCUUGua-CGGC-UACGGCU-GCGG-GC- -5'
12097 5' -56.9 NC_003309.1 + 17507 0.66 0.650099
Target:  5'- gGACGucagcGGCAcGCCGAcGCCGgccucACGCUCGa -3'
miRNA:   3'- -CUGC-----UUGUaCGGCUaCGGC-----UGCGGGC- -5'
12097 5' -56.9 NC_003309.1 + 11502 0.66 0.639233
Target:  5'- cGCGAGgcucgcCGUGUCGAUcgcGCCGGCgGCUCGa -3'
miRNA:   3'- cUGCUU------GUACGGCUA---CGGCUG-CGGGC- -5'
12097 5' -56.9 NC_003309.1 + 20152 0.66 0.639233
Target:  5'- cGACGAc---GCCGuuuucguUGUCGAUGCCCa -3'
miRNA:   3'- -CUGCUuguaCGGCu------ACGGCUGCGGGc -5'
12097 5' -56.9 NC_003309.1 + 42660 0.66 0.639233
Target:  5'- aGCGAACggGCCGgcGauGGCGUCCu -3'
miRNA:   3'- cUGCUUGuaCGGCuaCggCUGCGGGc -5'
12097 5' -56.9 NC_003309.1 + 31733 0.66 0.628362
Target:  5'- cGAUGAGCGUGagug-GCCGugGCCg- -3'
miRNA:   3'- -CUGCUUGUACggcuaCGGCugCGGgc -5'
12097 5' -56.9 NC_003309.1 + 8944 0.66 0.617494
Target:  5'- cGACGAugcgguUGUGCaCGggGCCGAaCGCCUc -3'
miRNA:   3'- -CUGCUu-----GUACG-GCuaCGGCU-GCGGGc -5'
12097 5' -56.9 NC_003309.1 + 17061 0.66 0.617494
Target:  5'- uACG-ACGUGCCGuUGuuGGCcguccccgcgaGCCCGg -3'
miRNA:   3'- cUGCuUGUACGGCuACggCUG-----------CGGGC- -5'
12097 5' -56.9 NC_003309.1 + 37327 0.66 0.606639
Target:  5'- cACGGGCGUcuaccugcGCgCGAucgUGCgCGACGCCCu -3'
miRNA:   3'- cUGCUUGUA--------CG-GCU---ACG-GCUGCGGGc -5'
12097 5' -56.9 NC_003309.1 + 1377 0.66 0.595805
Target:  5'- -uCGAGCAUuUCGAucaccUGCCGGCGCuuGu -3'
miRNA:   3'- cuGCUUGUAcGGCU-----ACGGCUGCGggC- -5'
12097 5' -56.9 NC_003309.1 + 5066 0.67 0.563516
Target:  5'- cACGGGCGcggcgGCCGGUGCCGcgacgGCGgUCGg -3'
miRNA:   3'- cUGCUUGUa----CGGCUACGGC-----UGCgGGC- -5'
12097 5' -56.9 NC_003309.1 + 45677 0.67 0.563516
Target:  5'- --aGGACGuUGCCcuUGcCCGACGCCCc -3'
miRNA:   3'- cugCUUGU-ACGGcuAC-GGCUGCGGGc -5'
12097 5' -56.9 NC_003309.1 + 18701 0.67 0.542247
Target:  5'- cGCGGAUAcggccGCCGAU-CCGGCGgCCGg -3'
miRNA:   3'- cUGCUUGUa----CGGCUAcGGCUGCgGGC- -5'
12097 5' -56.9 NC_003309.1 + 10332 0.68 0.530662
Target:  5'- cGACGAGCGcucGCCGGgcGCCGAcccacgcugucgcCGCCUGc -3'
miRNA:   3'- -CUGCUUGUa--CGGCUa-CGGCU-------------GCGGGC- -5'
12097 5' -56.9 NC_003309.1 + 44154 0.68 0.521251
Target:  5'- cGACGAGuccgcuuuuCGUGCggUGAUGCuCGuCGCCCGc -3'
miRNA:   3'- -CUGCUU---------GUACG--GCUACG-GCuGCGGGC- -5'
12097 5' -56.9 NC_003309.1 + 22403 0.68 0.510871
Target:  5'- aACGcuucGGCAUGCCGcUGCgCGucgaACGCCCGc -3'
miRNA:   3'- cUGC----UUGUACGGCuACG-GC----UGCGGGC- -5'
12097 5' -56.9 NC_003309.1 + 27329 0.68 0.500578
Target:  5'- cGGCGAAC-UGCCGAUGCaucaGAcuggauCGCCa- -3'
miRNA:   3'- -CUGCUUGuACGGCUACGg---CU------GCGGgc -5'
12097 5' -56.9 NC_003309.1 + 16772 0.68 0.500578
Target:  5'- cGGCGAACGUgagGCCGccGUCG-CGCgCCGa -3'
miRNA:   3'- -CUGCUUGUA---CGGCuaCGGCuGCG-GGC- -5'
12097 5' -56.9 NC_003309.1 + 15234 0.68 0.499554
Target:  5'- cGACuGAAgAUGCCGAUgaaagcgcagcacGUCGGCGCCg- -3'
miRNA:   3'- -CUG-CUUgUACGGCUA-------------CGGCUGCGGgc -5'
12097 5' -56.9 NC_003309.1 + 8186 0.68 0.489363
Target:  5'- cGACGAACAccagaucUGCCGc-GUCGAgGUCCGu -3'
miRNA:   3'- -CUGCUUGU-------ACGGCuaCGGCUgCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.