miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12098 5' -59 NC_003309.1 + 48933 0.66 0.514745
Target:  5'- cGGCACaCgCAGAaagcacgguucGCCGCGGCaCGcCGCc -3'
miRNA:   3'- -CCGUG-G-GUCU-----------UGGCGCCGcGUuGCGu -5'
12098 5' -59 NC_003309.1 + 22659 0.66 0.472389
Target:  5'- cGGCACCaucgcccacGCCgGCGGCGCuggaAGCGCc -3'
miRNA:   3'- -CCGUGGgucu-----UGG-CGCCGCG----UUGCGu -5'
12098 5' -59 NC_003309.1 + 1324 0.66 0.473377
Target:  5'- cGCGCCCGcagucgugaugauGAACaugaGCGGCuGuCGACGCGc -3'
miRNA:   3'- cCGUGGGU-------------CUUGg---CGCCG-C-GUUGCGU- -5'
12098 5' -59 NC_003309.1 + 27350 0.66 0.474367
Target:  5'- -cCGCCCAaAACgggaGCGGCGCGGCGa- -3'
miRNA:   3'- ccGUGGGUcUUGg---CGCCGCGUUGCgu -5'
12098 5' -59 NC_003309.1 + 48708 0.66 0.494368
Target:  5'- -aCugCCAauGCCGCGuGCGCGAuCGCu -3'
miRNA:   3'- ccGugGGUcuUGGCGC-CGCGUU-GCGu -5'
12098 5' -59 NC_003309.1 + 2593 0.66 0.494368
Target:  5'- --uGCCCGGAguccgACCGCGaGCuaccgaGCAACGCc -3'
miRNA:   3'- ccgUGGGUCU-----UGGCGC-CG------CGUUGCGu -5'
12098 5' -59 NC_003309.1 + 35812 0.66 0.50146
Target:  5'- cGGCgcaaucgacuuacuGCCCgAGucGCCGCaGCGCAACGa- -3'
miRNA:   3'- -CCG--------------UGGG-UCu-UGGCGcCGCGUUGCgu -5'
12098 5' -59 NC_003309.1 + 44444 0.66 0.504512
Target:  5'- cGuCGCCCGGccGACUGcCGGCGagcACGCAa -3'
miRNA:   3'- cC-GUGGGUC--UUGGC-GCCGCgu-UGCGU- -5'
12098 5' -59 NC_003309.1 + 53125 0.67 0.426242
Target:  5'- gGGCugaCAGAgGCCGCuGuCGCGGCGCAa -3'
miRNA:   3'- -CCGuggGUCU-UGGCGcC-GCGUUGCGU- -5'
12098 5' -59 NC_003309.1 + 40477 0.67 0.44515
Target:  5'- aGGgAgCCAGAggacGCCGgaguUGGuCGCGACGCAc -3'
miRNA:   3'- -CCgUgGGUCU----UGGC----GCC-GCGUUGCGU- -5'
12098 5' -59 NC_003309.1 + 9457 0.67 0.44515
Target:  5'- uGCGCCC---GCCGUcGCGCAcCGCAu -3'
miRNA:   3'- cCGUGGGucuUGGCGcCGCGUuGCGU- -5'
12098 5' -59 NC_003309.1 + 27949 0.67 0.454779
Target:  5'- uGCAUCgCAGAugcgUCGCGGCGgGcacGCGCAa -3'
miRNA:   3'- cCGUGG-GUCUu---GGCGCCGCgU---UGCGU- -5'
12098 5' -59 NC_003309.1 + 12072 0.67 0.454779
Target:  5'- cGCuACgCGGGccGCCGCGGCGUugguggauACGCGu -3'
miRNA:   3'- cCG-UGgGUCU--UGGCGCCGCGu-------UGCGU- -5'
12098 5' -59 NC_003309.1 + 42270 0.67 0.454779
Target:  5'- aGGUguuuCCaCAGAgcgauuucgaguGCCGCGG-GCAugGCAg -3'
miRNA:   3'- -CCGu---GG-GUCU------------UGGCGCCgCGUugCGU- -5'
12098 5' -59 NC_003309.1 + 18739 0.67 0.454779
Target:  5'- cGGCGCCUugucGAGCgugaucgucuCGcCGGCuGCGGCGCGg -3'
miRNA:   3'- -CCGUGGGu---CUUG----------GC-GCCG-CGUUGCGU- -5'
12098 5' -59 NC_003309.1 + 15399 0.67 0.454779
Target:  5'- cGCGCCgAcGAgAUCGCcaaGCGCAACGCAc -3'
miRNA:   3'- cCGUGGgU-CU-UGGCGc--CGCGUUGCGU- -5'
12098 5' -59 NC_003309.1 + 39254 0.67 0.464519
Target:  5'- aGCGCgCAGc-CCGCGGaucaGCAucGCGCAc -3'
miRNA:   3'- cCGUGgGUCuuGGCGCCg---CGU--UGCGU- -5'
12098 5' -59 NC_003309.1 + 37594 0.68 0.398796
Target:  5'- aGGUGCaacgcuaCGGcgacGACCGCGGCGuCAACGUc -3'
miRNA:   3'- -CCGUGg------GUC----UUGGCGCCGC-GUUGCGu -5'
12098 5' -59 NC_003309.1 + 43573 0.68 0.369946
Target:  5'- aGGC-CCCAGuACgGCGGCGaCGugacgaucgucugcACGCGc -3'
miRNA:   3'- -CCGuGGGUCuUGgCGCCGC-GU--------------UGCGU- -5'
12098 5' -59 NC_003309.1 + 7758 0.68 0.364012
Target:  5'- cGGCGCCU----UCGcCGGUGCGACGCc -3'
miRNA:   3'- -CCGUGGGucuuGGC-GCCGCGUUGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.