miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12098 5' -59 NC_003309.1 + 1791 1.1 0.000346
Target:  5'- gGGCACCCAGAACCGCGGCGCAACGCAg -3'
miRNA:   3'- -CCGUGGGUCUUGGCGCCGCGUUGCGU- -5'
12098 5' -59 NC_003309.1 + 15645 0.79 0.075116
Target:  5'- cGCACUCAGGACCGCGGUaguGCGAUugGCAg -3'
miRNA:   3'- cCGUGGGUCUUGGCGCCG---CGUUG--CGU- -5'
12098 5' -59 NC_003309.1 + 46673 0.77 0.093988
Target:  5'- aGGCGCUCAGGugACCGggcCGGCGCGuaauGCGCAg -3'
miRNA:   3'- -CCGUGGGUCU--UGGC---GCCGCGU----UGCGU- -5'
12098 5' -59 NC_003309.1 + 11986 0.77 0.099366
Target:  5'- cGCGCgCGGcAGCCGCGGCGC-GCGCc -3'
miRNA:   3'- cCGUGgGUC-UUGGCGCCGCGuUGCGu -5'
12098 5' -59 NC_003309.1 + 11238 0.71 0.246057
Target:  5'- cGGUACgCGGAcugcgcgucgucuGCCGC-GCGCGACGCc -3'
miRNA:   3'- -CCGUGgGUCU-------------UGGCGcCGCGUUGCGu -5'
12098 5' -59 NC_003309.1 + 35350 0.71 0.246681
Target:  5'- cGGCAUacaaCGGAGCCGaccgGGCGCAcaccCGCAg -3'
miRNA:   3'- -CCGUGg---GUCUUGGCg---CCGCGUu---GCGU- -5'
12098 5' -59 NC_003309.1 + 3567 0.71 0.252996
Target:  5'- uGGCGCCCG--ACCgcguagGCGGCGUAuCGCGa -3'
miRNA:   3'- -CCGUGGGUcuUGG------CGCCGCGUuGCGU- -5'
12098 5' -59 NC_003309.1 + 32025 0.7 0.300962
Target:  5'- cGGCcgugaACUgGGGACCG-GGCGCAcCGCGg -3'
miRNA:   3'- -CCG-----UGGgUCUUGGCgCCGCGUuGCGU- -5'
12098 5' -59 NC_003309.1 + 49391 0.69 0.331385
Target:  5'- cGCACuCCGGAugCGCgaucGGUGCAuuucgggaauaaACGCAu -3'
miRNA:   3'- cCGUG-GGUCUugGCG----CCGCGU------------UGCGU- -5'
12098 5' -59 NC_003309.1 + 44872 0.69 0.355651
Target:  5'- cGGCugACUCAGGuucGCCgGCGGCGauccGCGCAa -3'
miRNA:   3'- -CCG--UGGGUCU---UGG-CGCCGCgu--UGCGU- -5'
12098 5' -59 NC_003309.1 + 7758 0.68 0.364012
Target:  5'- cGGCGCCU----UCGcCGGUGCGACGCc -3'
miRNA:   3'- -CCGUGGGucuuGGC-GCCGCGUUGCGu -5'
12098 5' -59 NC_003309.1 + 43573 0.68 0.369946
Target:  5'- aGGC-CCCAGuACgGCGGCGaCGugacgaucgucugcACGCGc -3'
miRNA:   3'- -CCGuGGGUCuUGgCGCCGC-GU--------------UGCGU- -5'
12098 5' -59 NC_003309.1 + 37594 0.68 0.398796
Target:  5'- aGGUGCaacgcuaCGGcgacGACCGCGGCGuCAACGUc -3'
miRNA:   3'- -CCGUGg------GUC----UUGGCGCCGC-GUUGCGu -5'
12098 5' -59 NC_003309.1 + 22441 0.68 0.405099
Target:  5'- cGCugCCGGcgucGAgCGCGGCGCGcgagaucuugcccaACGCu -3'
miRNA:   3'- cCGugGGUC----UUgGCGCCGCGU--------------UGCGu -5'
12098 5' -59 NC_003309.1 + 53125 0.67 0.426242
Target:  5'- gGGCugaCAGAgGCCGCuGuCGCGGCGCAa -3'
miRNA:   3'- -CCGuggGUCU-UGGCGcC-GCGUUGCGU- -5'
12098 5' -59 NC_003309.1 + 9457 0.67 0.44515
Target:  5'- uGCGCCC---GCCGUcGCGCAcCGCAu -3'
miRNA:   3'- cCGUGGGucuUGGCGcCGCGUuGCGU- -5'
12098 5' -59 NC_003309.1 + 40477 0.67 0.44515
Target:  5'- aGGgAgCCAGAggacGCCGgaguUGGuCGCGACGCAc -3'
miRNA:   3'- -CCgUgGGUCU----UGGC----GCC-GCGUUGCGU- -5'
12098 5' -59 NC_003309.1 + 42270 0.67 0.454779
Target:  5'- aGGUguuuCCaCAGAgcgauuucgaguGCCGCGG-GCAugGCAg -3'
miRNA:   3'- -CCGu---GG-GUCU------------UGGCGCCgCGUugCGU- -5'
12098 5' -59 NC_003309.1 + 27949 0.67 0.454779
Target:  5'- uGCAUCgCAGAugcgUCGCGGCGgGcacGCGCAa -3'
miRNA:   3'- cCGUGG-GUCUu---GGCGCCGCgU---UGCGU- -5'
12098 5' -59 NC_003309.1 + 12072 0.67 0.454779
Target:  5'- cGCuACgCGGGccGCCGCGGCGUugguggauACGCGu -3'
miRNA:   3'- cCG-UGgGUCU--UGGCGCCGCGu-------UGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.