miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12098 5' -59 NC_003309.1 + 18739 0.67 0.454779
Target:  5'- cGGCGCCUugucGAGCgugaucgucuCGcCGGCuGCGGCGCGg -3'
miRNA:   3'- -CCGUGGGu---CUUG----------GC-GCCG-CGUUGCGU- -5'
12098 5' -59 NC_003309.1 + 15399 0.67 0.454779
Target:  5'- cGCGCCgAcGAgAUCGCcaaGCGCAACGCAc -3'
miRNA:   3'- cCGUGGgU-CU-UGGCGc--CGCGUUGCGU- -5'
12098 5' -59 NC_003309.1 + 39254 0.67 0.464519
Target:  5'- aGCGCgCAGc-CCGCGGaucaGCAucGCGCAc -3'
miRNA:   3'- cCGUGgGUCuuGGCGCCg---CGU--UGCGU- -5'
12098 5' -59 NC_003309.1 + 22659 0.66 0.472389
Target:  5'- cGGCACCaucgcccacGCCgGCGGCGCuggaAGCGCc -3'
miRNA:   3'- -CCGUGGgucu-----UGG-CGCCGCG----UUGCGu -5'
12098 5' -59 NC_003309.1 + 1324 0.66 0.473377
Target:  5'- cGCGCCCGcagucgugaugauGAACaugaGCGGCuGuCGACGCGc -3'
miRNA:   3'- cCGUGGGU-------------CUUGg---CGCCG-C-GUUGCGU- -5'
12098 5' -59 NC_003309.1 + 27350 0.66 0.474367
Target:  5'- -cCGCCCAaAACgggaGCGGCGCGGCGa- -3'
miRNA:   3'- ccGUGGGUcUUGg---CGCCGCGUUGCgu -5'
12098 5' -59 NC_003309.1 + 48708 0.66 0.494368
Target:  5'- -aCugCCAauGCCGCGuGCGCGAuCGCu -3'
miRNA:   3'- ccGugGGUcuUGGCGC-CGCGUU-GCGu -5'
12098 5' -59 NC_003309.1 + 2593 0.66 0.494368
Target:  5'- --uGCCCGGAguccgACCGCGaGCuaccgaGCAACGCc -3'
miRNA:   3'- ccgUGGGUCU-----UGGCGC-CG------CGUUGCGu -5'
12098 5' -59 NC_003309.1 + 35812 0.66 0.50146
Target:  5'- cGGCgcaaucgacuuacuGCCCgAGucGCCGCaGCGCAACGa- -3'
miRNA:   3'- -CCG--------------UGGG-UCu-UGGCGcCGCGUUGCgu -5'
12098 5' -59 NC_003309.1 + 44444 0.66 0.504512
Target:  5'- cGuCGCCCGGccGACUGcCGGCGagcACGCAa -3'
miRNA:   3'- cC-GUGGGUC--UUGGC-GCCGCgu-UGCGU- -5'
12098 5' -59 NC_003309.1 + 48933 0.66 0.514745
Target:  5'- cGGCACaCgCAGAaagcacgguucGCCGCGGCaCGcCGCc -3'
miRNA:   3'- -CCGUG-G-GUCU-----------UGGCGCCGcGUuGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.