Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12098 | 5' | -59 | NC_003309.1 | + | 18739 | 0.67 | 0.454779 |
Target: 5'- cGGCGCCUugucGAGCgugaucgucuCGcCGGCuGCGGCGCGg -3' miRNA: 3'- -CCGUGGGu---CUUG----------GC-GCCG-CGUUGCGU- -5' |
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12098 | 5' | -59 | NC_003309.1 | + | 15399 | 0.67 | 0.454779 |
Target: 5'- cGCGCCgAcGAgAUCGCcaaGCGCAACGCAc -3' miRNA: 3'- cCGUGGgU-CU-UGGCGc--CGCGUUGCGU- -5' |
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12098 | 5' | -59 | NC_003309.1 | + | 39254 | 0.67 | 0.464519 |
Target: 5'- aGCGCgCAGc-CCGCGGaucaGCAucGCGCAc -3' miRNA: 3'- cCGUGgGUCuuGGCGCCg---CGU--UGCGU- -5' |
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12098 | 5' | -59 | NC_003309.1 | + | 22659 | 0.66 | 0.472389 |
Target: 5'- cGGCACCaucgcccacGCCgGCGGCGCuggaAGCGCc -3' miRNA: 3'- -CCGUGGgucu-----UGG-CGCCGCG----UUGCGu -5' |
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12098 | 5' | -59 | NC_003309.1 | + | 1324 | 0.66 | 0.473377 |
Target: 5'- cGCGCCCGcagucgugaugauGAACaugaGCGGCuGuCGACGCGc -3' miRNA: 3'- cCGUGGGU-------------CUUGg---CGCCG-C-GUUGCGU- -5' |
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12098 | 5' | -59 | NC_003309.1 | + | 27350 | 0.66 | 0.474367 |
Target: 5'- -cCGCCCAaAACgggaGCGGCGCGGCGa- -3' miRNA: 3'- ccGUGGGUcUUGg---CGCCGCGUUGCgu -5' |
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12098 | 5' | -59 | NC_003309.1 | + | 48708 | 0.66 | 0.494368 |
Target: 5'- -aCugCCAauGCCGCGuGCGCGAuCGCu -3' miRNA: 3'- ccGugGGUcuUGGCGC-CGCGUU-GCGu -5' |
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12098 | 5' | -59 | NC_003309.1 | + | 2593 | 0.66 | 0.494368 |
Target: 5'- --uGCCCGGAguccgACCGCGaGCuaccgaGCAACGCc -3' miRNA: 3'- ccgUGGGUCU-----UGGCGC-CG------CGUUGCGu -5' |
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12098 | 5' | -59 | NC_003309.1 | + | 35812 | 0.66 | 0.50146 |
Target: 5'- cGGCgcaaucgacuuacuGCCCgAGucGCCGCaGCGCAACGa- -3' miRNA: 3'- -CCG--------------UGGG-UCu-UGGCGcCGCGUUGCgu -5' |
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12098 | 5' | -59 | NC_003309.1 | + | 44444 | 0.66 | 0.504512 |
Target: 5'- cGuCGCCCGGccGACUGcCGGCGagcACGCAa -3' miRNA: 3'- cC-GUGGGUC--UUGGC-GCCGCgu-UGCGU- -5' |
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12098 | 5' | -59 | NC_003309.1 | + | 48933 | 0.66 | 0.514745 |
Target: 5'- cGGCACaCgCAGAaagcacgguucGCCGCGGCaCGcCGCc -3' miRNA: 3'- -CCGUG-G-GUCU-----------UGGCGCCGcGUuGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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