miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12098 5' -59 NC_003309.1 + 39254 0.67 0.464519
Target:  5'- aGCGCgCAGc-CCGCGGaucaGCAucGCGCAc -3'
miRNA:   3'- cCGUGgGUCuuGGCGCCg---CGU--UGCGU- -5'
12098 5' -59 NC_003309.1 + 40477 0.67 0.44515
Target:  5'- aGGgAgCCAGAggacGCCGgaguUGGuCGCGACGCAc -3'
miRNA:   3'- -CCgUgGGUCU----UGGC----GCC-GCGUUGCGU- -5'
12098 5' -59 NC_003309.1 + 42270 0.67 0.454779
Target:  5'- aGGUguuuCCaCAGAgcgauuucgaguGCCGCGG-GCAugGCAg -3'
miRNA:   3'- -CCGu---GG-GUCU------------UGGCGCCgCGUugCGU- -5'
12098 5' -59 NC_003309.1 + 43573 0.68 0.369946
Target:  5'- aGGC-CCCAGuACgGCGGCGaCGugacgaucgucugcACGCGc -3'
miRNA:   3'- -CCGuGGGUCuUGgCGCCGC-GU--------------UGCGU- -5'
12098 5' -59 NC_003309.1 + 44444 0.66 0.504512
Target:  5'- cGuCGCCCGGccGACUGcCGGCGagcACGCAa -3'
miRNA:   3'- cC-GUGGGUC--UUGGC-GCCGCgu-UGCGU- -5'
12098 5' -59 NC_003309.1 + 44872 0.69 0.355651
Target:  5'- cGGCugACUCAGGuucGCCgGCGGCGauccGCGCAa -3'
miRNA:   3'- -CCG--UGGGUCU---UGG-CGCCGCgu--UGCGU- -5'
12098 5' -59 NC_003309.1 + 46673 0.77 0.093988
Target:  5'- aGGCGCUCAGGugACCGggcCGGCGCGuaauGCGCAg -3'
miRNA:   3'- -CCGUGGGUCU--UGGC---GCCGCGU----UGCGU- -5'
12098 5' -59 NC_003309.1 + 48708 0.66 0.494368
Target:  5'- -aCugCCAauGCCGCGuGCGCGAuCGCu -3'
miRNA:   3'- ccGugGGUcuUGGCGC-CGCGUU-GCGu -5'
12098 5' -59 NC_003309.1 + 48933 0.66 0.514745
Target:  5'- cGGCACaCgCAGAaagcacgguucGCCGCGGCaCGcCGCc -3'
miRNA:   3'- -CCGUG-G-GUCU-----------UGGCGCCGcGUuGCGu -5'
12098 5' -59 NC_003309.1 + 49391 0.69 0.331385
Target:  5'- cGCACuCCGGAugCGCgaucGGUGCAuuucgggaauaaACGCAu -3'
miRNA:   3'- cCGUG-GGUCUugGCG----CCGCGU------------UGCGU- -5'
12098 5' -59 NC_003309.1 + 53125 0.67 0.426242
Target:  5'- gGGCugaCAGAgGCCGCuGuCGCGGCGCAa -3'
miRNA:   3'- -CCGuggGUCU-UGGCGcC-GCGUUGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.