Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12098 | 5' | -59 | NC_003309.1 | + | 1324 | 0.66 | 0.473377 |
Target: 5'- cGCGCCCGcagucgugaugauGAACaugaGCGGCuGuCGACGCGc -3' miRNA: 3'- cCGUGGGU-------------CUUGg---CGCCG-C-GUUGCGU- -5' |
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12098 | 5' | -59 | NC_003309.1 | + | 1791 | 1.1 | 0.000346 |
Target: 5'- gGGCACCCAGAACCGCGGCGCAACGCAg -3' miRNA: 3'- -CCGUGGGUCUUGGCGCCGCGUUGCGU- -5' |
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12098 | 5' | -59 | NC_003309.1 | + | 2593 | 0.66 | 0.494368 |
Target: 5'- --uGCCCGGAguccgACCGCGaGCuaccgaGCAACGCc -3' miRNA: 3'- ccgUGGGUCU-----UGGCGC-CG------CGUUGCGu -5' |
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12098 | 5' | -59 | NC_003309.1 | + | 3567 | 0.71 | 0.252996 |
Target: 5'- uGGCGCCCG--ACCgcguagGCGGCGUAuCGCGa -3' miRNA: 3'- -CCGUGGGUcuUGG------CGCCGCGUuGCGU- -5' |
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12098 | 5' | -59 | NC_003309.1 | + | 7758 | 0.68 | 0.364012 |
Target: 5'- cGGCGCCU----UCGcCGGUGCGACGCc -3' miRNA: 3'- -CCGUGGGucuuGGC-GCCGCGUUGCGu -5' |
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12098 | 5' | -59 | NC_003309.1 | + | 9457 | 0.67 | 0.44515 |
Target: 5'- uGCGCCC---GCCGUcGCGCAcCGCAu -3' miRNA: 3'- cCGUGGGucuUGGCGcCGCGUuGCGU- -5' |
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12098 | 5' | -59 | NC_003309.1 | + | 11238 | 0.71 | 0.246057 |
Target: 5'- cGGUACgCGGAcugcgcgucgucuGCCGC-GCGCGACGCc -3' miRNA: 3'- -CCGUGgGUCU-------------UGGCGcCGCGUUGCGu -5' |
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12098 | 5' | -59 | NC_003309.1 | + | 11986 | 0.77 | 0.099366 |
Target: 5'- cGCGCgCGGcAGCCGCGGCGC-GCGCc -3' miRNA: 3'- cCGUGgGUC-UUGGCGCCGCGuUGCGu -5' |
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12098 | 5' | -59 | NC_003309.1 | + | 12072 | 0.67 | 0.454779 |
Target: 5'- cGCuACgCGGGccGCCGCGGCGUugguggauACGCGu -3' miRNA: 3'- cCG-UGgGUCU--UGGCGCCGCGu-------UGCGU- -5' |
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12098 | 5' | -59 | NC_003309.1 | + | 15399 | 0.67 | 0.454779 |
Target: 5'- cGCGCCgAcGAgAUCGCcaaGCGCAACGCAc -3' miRNA: 3'- cCGUGGgU-CU-UGGCGc--CGCGUUGCGU- -5' |
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12098 | 5' | -59 | NC_003309.1 | + | 15645 | 0.79 | 0.075116 |
Target: 5'- cGCACUCAGGACCGCGGUaguGCGAUugGCAg -3' miRNA: 3'- cCGUGGGUCUUGGCGCCG---CGUUG--CGU- -5' |
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12098 | 5' | -59 | NC_003309.1 | + | 18739 | 0.67 | 0.454779 |
Target: 5'- cGGCGCCUugucGAGCgugaucgucuCGcCGGCuGCGGCGCGg -3' miRNA: 3'- -CCGUGGGu---CUUG----------GC-GCCG-CGUUGCGU- -5' |
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12098 | 5' | -59 | NC_003309.1 | + | 22441 | 0.68 | 0.405099 |
Target: 5'- cGCugCCGGcgucGAgCGCGGCGCGcgagaucuugcccaACGCu -3' miRNA: 3'- cCGugGGUC----UUgGCGCCGCGU--------------UGCGu -5' |
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12098 | 5' | -59 | NC_003309.1 | + | 22659 | 0.66 | 0.472389 |
Target: 5'- cGGCACCaucgcccacGCCgGCGGCGCuggaAGCGCc -3' miRNA: 3'- -CCGUGGgucu-----UGG-CGCCGCG----UUGCGu -5' |
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12098 | 5' | -59 | NC_003309.1 | + | 27350 | 0.66 | 0.474367 |
Target: 5'- -cCGCCCAaAACgggaGCGGCGCGGCGa- -3' miRNA: 3'- ccGUGGGUcUUGg---CGCCGCGUUGCgu -5' |
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12098 | 5' | -59 | NC_003309.1 | + | 27949 | 0.67 | 0.454779 |
Target: 5'- uGCAUCgCAGAugcgUCGCGGCGgGcacGCGCAa -3' miRNA: 3'- cCGUGG-GUCUu---GGCGCCGCgU---UGCGU- -5' |
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12098 | 5' | -59 | NC_003309.1 | + | 32025 | 0.7 | 0.300962 |
Target: 5'- cGGCcgugaACUgGGGACCG-GGCGCAcCGCGg -3' miRNA: 3'- -CCG-----UGGgUCUUGGCgCCGCGUuGCGU- -5' |
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12098 | 5' | -59 | NC_003309.1 | + | 35350 | 0.71 | 0.246681 |
Target: 5'- cGGCAUacaaCGGAGCCGaccgGGCGCAcaccCGCAg -3' miRNA: 3'- -CCGUGg---GUCUUGGCg---CCGCGUu---GCGU- -5' |
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12098 | 5' | -59 | NC_003309.1 | + | 35812 | 0.66 | 0.50146 |
Target: 5'- cGGCgcaaucgacuuacuGCCCgAGucGCCGCaGCGCAACGa- -3' miRNA: 3'- -CCG--------------UGGG-UCu-UGGCGcCGCGUUGCgu -5' |
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12098 | 5' | -59 | NC_003309.1 | + | 37594 | 0.68 | 0.398796 |
Target: 5'- aGGUGCaacgcuaCGGcgacGACCGCGGCGuCAACGUc -3' miRNA: 3'- -CCGUGg------GUC----UUGGCGCCGC-GUUGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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