miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12102 5' -60.3 NC_003309.1 + 46151 0.69 0.322265
Target:  5'- aCCGCCAuGCagcagUCGAGCagcuucaaagcagaGCGCaCGGUCGg -3'
miRNA:   3'- aGGCGGU-CG-----AGCUUG--------------CGCG-GCCAGCg -5'
12102 5' -60.3 NC_003309.1 + 45770 0.78 0.07537
Target:  5'- aCCGUCuucgGGUUCGGcgccugauguACGCGCCGGUCGUa -3'
miRNA:   3'- aGGCGG----UCGAGCU----------UGCGCGGCCAGCG- -5'
12102 5' -60.3 NC_003309.1 + 22747 0.71 0.224977
Target:  5'- gCCGUCAGUuugUCGAucuCGCGCUGaucGUCGCc -3'
miRNA:   3'- aGGCGGUCG---AGCUu--GCGCGGC---CAGCG- -5'
12102 5' -60.3 NC_003309.1 + 10612 0.73 0.156652
Target:  5'- aCUGCCGGCaacguUCGcGCGUGCC-GUCGCg -3'
miRNA:   3'- aGGCGGUCG-----AGCuUGCGCGGcCAGCG- -5'
12102 5' -60.3 NC_003309.1 + 22440 0.72 0.18329
Target:  5'- gCUGCCGGCgUCGAGCGCGgCG--CGCg -3'
miRNA:   3'- aGGCGGUCG-AGCUUGCGCgGCcaGCG- -5'
12102 5' -60.3 NC_003309.1 + 43529 0.72 0.193024
Target:  5'- gCCGUCGGCggccaucGCGCGCaucaGGUCGCg -3'
miRNA:   3'- aGGCGGUCGagcu---UGCGCGg---CCAGCG- -5'
12102 5' -60.3 NC_003309.1 + 31529 0.76 0.096534
Target:  5'- -gCGCCAGCUCGAACuaCGCCGGccaGCc -3'
miRNA:   3'- agGCGGUCGAGCUUGc-GCGGCCag-CG- -5'
12102 5' -60.3 NC_003309.1 + 42146 0.69 0.302275
Target:  5'- cCUGcCCAGCUCGGaaGCGCGCguugacgcucUGGaCGCa -3'
miRNA:   3'- aGGC-GGUCGAGCU--UGCGCG----------GCCaGCG- -5'
12102 5' -60.3 NC_003309.1 + 11744 0.69 0.309566
Target:  5'- cCCGCCAuGCg-GAccuGCGCGUCGuUCGCg -3'
miRNA:   3'- aGGCGGU-CGagCU---UGCGCGGCcAGCG- -5'
12102 5' -60.3 NC_003309.1 + 7618 0.69 0.316241
Target:  5'- cUCgGCCucGC-CGAucgACGCaucaaacGCCGGUCGCa -3'
miRNA:   3'- -AGgCGGu-CGaGCU---UGCG-------CGGCCAGCG- -5'
12102 5' -60.3 NC_003309.1 + 11495 0.69 0.286011
Target:  5'- cUCGCCGugUCGAuCGCGCCGGcggcucgaacaaguUCGCa -3'
miRNA:   3'- aGGCGGUcgAGCUuGCGCGGCC--------------AGCG- -5'
12102 5' -60.3 NC_003309.1 + 7807 0.69 0.324546
Target:  5'- -gCGCCAugUCGAGCGCGCCauGUaCGCg -3'
miRNA:   3'- agGCGGUcgAGCUUGCGCGGc-CA-GCG- -5'
12102 5' -60.3 NC_003309.1 + 22645 0.69 0.324546
Target:  5'- -aCGCCGGCggcgcUGGAaGCGCCGGgcaCGCc -3'
miRNA:   3'- agGCGGUCGa----GCUUgCGCGGCCa--GCG- -5'
12102 5' -60.3 NC_003309.1 + 5573 0.69 0.324546
Target:  5'- -aCGCCuuGUcuUCGcGCGCGCCGaUCGCg -3'
miRNA:   3'- agGCGGu-CG--AGCuUGCGCGGCcAGCG- -5'
12102 5' -60.3 NC_003309.1 + 10873 0.68 0.332237
Target:  5'- uUCCGCUcGCUC--GCGCGCCuGcGUgGCa -3'
miRNA:   3'- -AGGCGGuCGAGcuUGCGCGG-C-CAgCG- -5'
12102 5' -60.3 NC_003309.1 + 11988 0.68 0.34006
Target:  5'- cCCGCgcgcggCAGCcgCGGcGCGCGCCGcGUCGg -3'
miRNA:   3'- aGGCG------GUCGa-GCU-UGCGCGGC-CAGCg -5'
12102 5' -60.3 NC_003309.1 + 10569 0.68 0.348016
Target:  5'- gCCGCCGcCUCGAcggcACGCGCuuCGGcaagcuUCGCu -3'
miRNA:   3'- aGGCGGUcGAGCU----UGCGCG--GCC------AGCG- -5'
12102 5' -60.3 NC_003309.1 + 5173 0.68 0.356104
Target:  5'- aUCGCCAGuUUCGAggcgagcuGCGCGUCGccgCGCg -3'
miRNA:   3'- aGGCGGUC-GAGCU--------UGCGCGGCca-GCG- -5'
12102 5' -60.3 NC_003309.1 + 19038 0.67 0.381152
Target:  5'- aUCgGCCGuuGCUgGAucuGCGCGCC-GUCGUc -3'
miRNA:   3'- -AGgCGGU--CGAgCU---UGCGCGGcCAGCG- -5'
12102 5' -60.3 NC_003309.1 + 18715 0.67 0.381152
Target:  5'- cUCGCCGGCUgCG-GCGCGgauaCGGcCGCc -3'
miRNA:   3'- aGGCGGUCGA-GCuUGCGCg---GCCaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.