Results 21 - 40 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12103 | 5' | -61.8 | NC_003309.1 | + | 5559 | 0.66 | 0.400569 |
Target: 5'- cGCGCGCCGaUCGCGgcggugaGGuCGC-CG-ACCAc -3' miRNA: 3'- -CGCGCGGC-GGCGC-------UC-GCGuGCaUGGU- -5' |
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12103 | 5' | -61.8 | NC_003309.1 | + | 10743 | 0.67 | 0.312428 |
Target: 5'- -aGCGCCGUccgucgcugcugCGCGAGCGCgaGCGaaGCCu -3' miRNA: 3'- cgCGCGGCG------------GCGCUCGCG--UGCa-UGGu -5' |
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12103 | 5' | -61.8 | NC_003309.1 | + | 50022 | 0.67 | 0.312428 |
Target: 5'- uCGUGCgGaCCGCGcucaccacggcAGCGCACuGUGCCc -3' miRNA: 3'- cGCGCGgC-GGCGC-----------UCGCGUG-CAUGGu -5' |
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12103 | 5' | -61.8 | NC_003309.1 | + | 13109 | 0.67 | 0.319118 |
Target: 5'- uGCGCGCaCGCCcggcuGCGAcaccacuGCGgCGCGgACCAc -3' miRNA: 3'- -CGCGCG-GCGG-----CGCU-------CGC-GUGCaUGGU- -5' |
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12103 | 5' | -61.8 | NC_003309.1 | + | 11226 | 0.67 | 0.319867 |
Target: 5'- uGCGCGUCGuCUGCc-GCGCGCGacGCCu -3' miRNA: 3'- -CGCGCGGC-GGCGcuCGCGUGCa-UGGu -5' |
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12103 | 5' | -61.8 | NC_003309.1 | + | 46659 | 0.67 | 0.342978 |
Target: 5'- cCGgGCCGgCGCGuaauGCGCAgCGcACCGg -3' miRNA: 3'- cGCgCGGCgGCGCu---CGCGU-GCaUGGU- -5' |
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12103 | 5' | -61.8 | NC_003309.1 | + | 19020 | 0.67 | 0.350944 |
Target: 5'- uGCGCGCCGUCGuCGAucGCcGCAUacuUGCCc -3' miRNA: 3'- -CGCGCGGCGGC-GCU--CG-CGUGc--AUGGu -5' |
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12103 | 5' | -61.8 | NC_003309.1 | + | 18412 | 0.67 | 0.350944 |
Target: 5'- aGCGCGaCCGUguagCGCGucuuGCGCuCGcUGCCGa -3' miRNA: 3'- -CGCGC-GGCG----GCGCu---CGCGuGC-AUGGU- -5' |
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12103 | 5' | -61.8 | NC_003309.1 | + | 3566 | 0.67 | 0.350944 |
Target: 5'- gGCGC-CCGaCCGCGuaGGCG-GCGUAUCGc -3' miRNA: 3'- -CGCGcGGC-GGCGC--UCGCgUGCAUGGU- -5' |
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12103 | 5' | -61.8 | NC_003309.1 | + | 39621 | 0.68 | 0.270552 |
Target: 5'- aCGCGCUGCCaagcauGCGAGCGUGC-UGCg- -3' miRNA: 3'- cGCGCGGCGG------CGCUCGCGUGcAUGgu -5' |
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12103 | 5' | -61.8 | NC_003309.1 | + | 3926 | 0.68 | 0.270552 |
Target: 5'- uGCGCGCCGCUGuCGAauuCGC-CGUccuCCAu -3' miRNA: 3'- -CGCGCGGCGGC-GCUc--GCGuGCAu--GGU- -5' |
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12103 | 5' | -61.8 | NC_003309.1 | + | 15980 | 0.68 | 0.283987 |
Target: 5'- -gGCGCgGCUGCGAgguuucggcaGgGCACGUACg- -3' miRNA: 3'- cgCGCGgCGGCGCU----------CgCGUGCAUGgu -5' |
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12103 | 5' | -61.8 | NC_003309.1 | + | 10960 | 0.68 | 0.290901 |
Target: 5'- cGUGC-CCGUacgCGCGAGCGC-CGUcugcGCCGu -3' miRNA: 3'- -CGCGcGGCG---GCGCUCGCGuGCA----UGGU- -5' |
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12103 | 5' | -61.8 | NC_003309.1 | + | 43708 | 0.68 | 0.297945 |
Target: 5'- aGCGUGCCaUCGuCGgcuagcAGCGCGCGcGCCAg -3' miRNA: 3'- -CGCGCGGcGGC-GC------UCGCGUGCaUGGU- -5' |
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12103 | 5' | -61.8 | NC_003309.1 | + | 11056 | 0.68 | 0.30512 |
Target: 5'- cGCG-GCCGCgC-CGAGUGCGacCGUGCCc -3' miRNA: 3'- -CGCgCGGCG-GcGCUCGCGU--GCAUGGu -5' |
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12103 | 5' | -61.8 | NC_003309.1 | + | 19392 | 0.69 | 0.245223 |
Target: 5'- aUGC-CCGCCGCGgucAGCGaCACG-ACCGa -3' miRNA: 3'- cGCGcGGCGGCGC---UCGC-GUGCaUGGU- -5' |
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12103 | 5' | -61.8 | NC_003309.1 | + | 31971 | 0.69 | 0.264029 |
Target: 5'- gGCGCaaGCCGCuCGCGuggaacgcAGCGCACGaACa- -3' miRNA: 3'- -CGCG--CGGCG-GCGC--------UCGCGUGCaUGgu -5' |
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12103 | 5' | -61.8 | NC_003309.1 | + | 19285 | 0.69 | 0.257633 |
Target: 5'- gGCGCGCaCGCgCGCGAG-GUAUuUGCCc -3' miRNA: 3'- -CGCGCG-GCG-GCGCUCgCGUGcAUGGu -5' |
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12103 | 5' | -61.8 | NC_003309.1 | + | 46962 | 0.69 | 0.257633 |
Target: 5'- uGCGUGCCGUCGuCGuGCgaaugguccGCAaGUGCCAg -3' miRNA: 3'- -CGCGCGGCGGC-GCuCG---------CGUgCAUGGU- -5' |
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12103 | 5' | -61.8 | NC_003309.1 | + | 46327 | 0.69 | 0.251365 |
Target: 5'- cGCGUGCCGCCGUaccGCcgaGCACG-GCCu -3' miRNA: 3'- -CGCGCGGCGGCGcu-CG---CGUGCaUGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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