miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12103 5' -61.8 NC_003309.1 + 46327 0.69 0.251365
Target:  5'- cGCGUGCCGCCGUaccGCcgaGCACG-GCCu -3'
miRNA:   3'- -CGCGCGGCGGCGcu-CG---CGUGCaUGGu -5'
12103 5' -61.8 NC_003309.1 + 46962 0.69 0.257633
Target:  5'- uGCGUGCCGUCGuCGuGCgaaugguccGCAaGUGCCAg -3'
miRNA:   3'- -CGCGCGGCGGC-GCuCG---------CGUgCAUGGU- -5'
12103 5' -61.8 NC_003309.1 + 19285 0.69 0.257633
Target:  5'- gGCGCGCaCGCgCGCGAG-GUAUuUGCCc -3'
miRNA:   3'- -CGCGCG-GCG-GCGCUCgCGUGcAUGGu -5'
12103 5' -61.8 NC_003309.1 + 31971 0.69 0.264029
Target:  5'- gGCGCaaGCCGCuCGCGuggaacgcAGCGCACGaACa- -3'
miRNA:   3'- -CGCG--CGGCG-GCGC--------UCGCGUGCaUGgu -5'
12103 5' -61.8 NC_003309.1 + 17747 0.69 0.264029
Target:  5'- cGCGCGCgGCagcucgauccgaUGCGAGCGCuCGUAg-- -3'
miRNA:   3'- -CGCGCGgCG------------GCGCUCGCGuGCAUggu -5'
12103 5' -61.8 NC_003309.1 + 39621 0.68 0.270552
Target:  5'- aCGCGCUGCCaagcauGCGAGCGUGC-UGCg- -3'
miRNA:   3'- cGCGCGGCGG------CGCUCGCGUGcAUGgu -5'
12103 5' -61.8 NC_003309.1 + 3926 0.68 0.270552
Target:  5'- uGCGCGCCGCUGuCGAauuCGC-CGUccuCCAu -3'
miRNA:   3'- -CGCGCGGCGGC-GCUc--GCGuGCAu--GGU- -5'
12103 5' -61.8 NC_003309.1 + 15980 0.68 0.283987
Target:  5'- -gGCGCgGCUGCGAgguuucggcaGgGCACGUACg- -3'
miRNA:   3'- cgCGCGgCGGCGCU----------CgCGUGCAUGgu -5'
12103 5' -61.8 NC_003309.1 + 10960 0.68 0.290901
Target:  5'- cGUGC-CCGUacgCGCGAGCGC-CGUcugcGCCGu -3'
miRNA:   3'- -CGCGcGGCG---GCGCUCGCGuGCA----UGGU- -5'
12103 5' -61.8 NC_003309.1 + 43708 0.68 0.297945
Target:  5'- aGCGUGCCaUCGuCGgcuagcAGCGCGCGcGCCAg -3'
miRNA:   3'- -CGCGCGGcGGC-GC------UCGCGUGCaUGGU- -5'
12103 5' -61.8 NC_003309.1 + 11056 0.68 0.30512
Target:  5'- cGCG-GCCGCgC-CGAGUGCGacCGUGCCc -3'
miRNA:   3'- -CGCgCGGCG-GcGCUCGCGU--GCAUGGu -5'
12103 5' -61.8 NC_003309.1 + 10743 0.67 0.312428
Target:  5'- -aGCGCCGUccgucgcugcugCGCGAGCGCgaGCGaaGCCu -3'
miRNA:   3'- cgCGCGGCG------------GCGCUCGCG--UGCa-UGGu -5'
12103 5' -61.8 NC_003309.1 + 50022 0.67 0.312428
Target:  5'- uCGUGCgGaCCGCGcucaccacggcAGCGCACuGUGCCc -3'
miRNA:   3'- cGCGCGgC-GGCGC-----------UCGCGUG-CAUGGu -5'
12103 5' -61.8 NC_003309.1 + 13109 0.67 0.319118
Target:  5'- uGCGCGCaCGCCcggcuGCGAcaccacuGCGgCGCGgACCAc -3'
miRNA:   3'- -CGCGCG-GCGG-----CGCU-------CGC-GUGCaUGGU- -5'
12103 5' -61.8 NC_003309.1 + 11226 0.67 0.319867
Target:  5'- uGCGCGUCGuCUGCc-GCGCGCGacGCCu -3'
miRNA:   3'- -CGCGCGGC-GGCGcuCGCGUGCa-UGGu -5'
12103 5' -61.8 NC_003309.1 + 46659 0.67 0.342978
Target:  5'- cCGgGCCGgCGCGuaauGCGCAgCGcACCGg -3'
miRNA:   3'- cGCgCGGCgGCGCu---CGCGU-GCaUGGU- -5'
12103 5' -61.8 NC_003309.1 + 18412 0.67 0.350944
Target:  5'- aGCGCGaCCGUguagCGCGucuuGCGCuCGcUGCCGa -3'
miRNA:   3'- -CGCGC-GGCG----GCGCu---CGCGuGC-AUGGU- -5'
12103 5' -61.8 NC_003309.1 + 3566 0.67 0.350944
Target:  5'- gGCGC-CCGaCCGCGuaGGCG-GCGUAUCGc -3'
miRNA:   3'- -CGCGcGGC-GGCGC--UCGCgUGCAUGGU- -5'
12103 5' -61.8 NC_003309.1 + 19020 0.67 0.350944
Target:  5'- uGCGCGCCGUCGuCGAucGCcGCAUacuUGCCc -3'
miRNA:   3'- -CGCGCGGCGGC-GCU--CG-CGUGc--AUGGu -5'
12103 5' -61.8 NC_003309.1 + 11549 0.66 0.359041
Target:  5'- cGUGCGgccacguucaUCGCCGUGAGUGCuuGCGcGCCc -3'
miRNA:   3'- -CGCGC----------GGCGGCGCUCGCG--UGCaUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.