Results 21 - 40 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12103 | 5' | -61.8 | NC_003309.1 | + | 10960 | 0.68 | 0.290901 |
Target: 5'- cGUGC-CCGUacgCGCGAGCGC-CGUcugcGCCGu -3' miRNA: 3'- -CGCGcGGCG---GCGCUCGCGuGCA----UGGU- -5' |
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12103 | 5' | -61.8 | NC_003309.1 | + | 11056 | 0.68 | 0.30512 |
Target: 5'- cGCG-GCCGCgC-CGAGUGCGacCGUGCCc -3' miRNA: 3'- -CGCgCGGCG-GcGCUCGCGU--GCAUGGu -5' |
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12103 | 5' | -61.8 | NC_003309.1 | + | 11226 | 0.67 | 0.319867 |
Target: 5'- uGCGCGUCGuCUGCc-GCGCGCGacGCCu -3' miRNA: 3'- -CGCGCGGC-GGCGcuCGCGUGCa-UGGu -5' |
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12103 | 5' | -61.8 | NC_003309.1 | + | 11549 | 0.66 | 0.359041 |
Target: 5'- cGUGCGgccacguucaUCGCCGUGAGUGCuuGCGcGCCc -3' miRNA: 3'- -CGCGC----------GGCGGCGCUCGCG--UGCaUGGu -5' |
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12103 | 5' | -61.8 | NC_003309.1 | + | 11986 | 0.74 | 0.109365 |
Target: 5'- cGCGCGCggcaGCCGCG-GCGCGC--GCCGc -3' miRNA: 3'- -CGCGCGg---CGGCGCuCGCGUGcaUGGU- -5' |
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12103 | 5' | -61.8 | NC_003309.1 | + | 12067 | 0.77 | 0.063243 |
Target: 5'- cGCGgGCCGCCGCG-GCGUugGUGg-- -3' miRNA: 3'- -CGCgCGGCGGCGCuCGCGugCAUggu -5' |
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12103 | 5' | -61.8 | NC_003309.1 | + | 13109 | 0.67 | 0.319118 |
Target: 5'- uGCGCGCaCGCCcggcuGCGAcaccacuGCGgCGCGgACCAc -3' miRNA: 3'- -CGCGCG-GCGG-----CGCU-------CGC-GUGCaUGGU- -5' |
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12103 | 5' | -61.8 | NC_003309.1 | + | 15980 | 0.68 | 0.283987 |
Target: 5'- -gGCGCgGCUGCGAgguuucggcaGgGCACGUACg- -3' miRNA: 3'- cgCGCGgCGGCGCU----------CgCGUGCAUGgu -5' |
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12103 | 5' | -61.8 | NC_003309.1 | + | 16751 | 0.66 | 0.401448 |
Target: 5'- cGCGCGCCGaCGUcagGAaCGCGCGgaaGCCc -3' miRNA: 3'- -CGCGCGGCgGCG---CUcGCGUGCa--UGGu -5' |
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12103 | 5' | -61.8 | NC_003309.1 | + | 17747 | 0.69 | 0.264029 |
Target: 5'- cGCGCGCgGCagcucgauccgaUGCGAGCGCuCGUAg-- -3' miRNA: 3'- -CGCGCGgCG------------GCGCUCGCGuGCAUggu -5' |
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12103 | 5' | -61.8 | NC_003309.1 | + | 18412 | 0.67 | 0.350944 |
Target: 5'- aGCGCGaCCGUguagCGCGucuuGCGCuCGcUGCCGa -3' miRNA: 3'- -CGCGC-GGCG----GCGCu---CGCGuGC-AUGGU- -5' |
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12103 | 5' | -61.8 | NC_003309.1 | + | 19020 | 0.67 | 0.350944 |
Target: 5'- uGCGCGCCGUCGuCGAucGCcGCAUacuUGCCc -3' miRNA: 3'- -CGCGCGGCGGC-GCU--CG-CGUGc--AUGGu -5' |
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12103 | 5' | -61.8 | NC_003309.1 | + | 19285 | 0.69 | 0.257633 |
Target: 5'- gGCGCGCaCGCgCGCGAG-GUAUuUGCCc -3' miRNA: 3'- -CGCGCG-GCG-GCGCUCgCGUGcAUGGu -5' |
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12103 | 5' | -61.8 | NC_003309.1 | + | 19392 | 0.69 | 0.245223 |
Target: 5'- aUGC-CCGCCGCGgucAGCGaCACG-ACCGa -3' miRNA: 3'- cGCGcGGCGGCGC---UCGC-GUGCaUGGU- -5' |
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12103 | 5' | -61.8 | NC_003309.1 | + | 19498 | 0.72 | 0.14291 |
Target: 5'- uCGCGUCGUCGCGAuucgGCGUGCGgcugUACCAg -3' miRNA: 3'- cGCGCGGCGGCGCU----CGCGUGC----AUGGU- -5' |
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12103 | 5' | -61.8 | NC_003309.1 | + | 19956 | 0.66 | 0.375623 |
Target: 5'- cGCGCGauCCGCUuCGAcGCGCGCG-AUCGc -3' miRNA: 3'- -CGCGC--GGCGGcGCU-CGCGUGCaUGGU- -5' |
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12103 | 5' | -61.8 | NC_003309.1 | + | 22063 | 0.71 | 0.195417 |
Target: 5'- gGCGaagcucacCGCCGCCGCGAGCuGaUAUGUGCg- -3' miRNA: 3'- -CGC--------GCGGCGGCGCUCG-C-GUGCAUGgu -5' |
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12103 | 5' | -61.8 | NC_003309.1 | + | 22100 | 0.73 | 0.121793 |
Target: 5'- uUGUGCUGCCGCaguaGGCGCGCGgcCCGa -3' miRNA: 3'- cGCGCGGCGGCGc---UCGCGUGCauGGU- -5' |
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12103 | 5' | -61.8 | NC_003309.1 | + | 22317 | 0.66 | 0.401448 |
Target: 5'- -aGCGCCgGCCGCcaugccaAGCaGCGCG-GCCAa -3' miRNA: 3'- cgCGCGG-CGGCGc------UCG-CGUGCaUGGU- -5' |
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12103 | 5' | -61.8 | NC_003309.1 | + | 22459 | 0.66 | 0.401448 |
Target: 5'- uCGUG-CGCgGCGAuCGCACGcUGCCGg -3' miRNA: 3'- cGCGCgGCGgCGCUcGCGUGC-AUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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