Results 21 - 30 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 12104 | 3' | -57.5 | NC_003309.1 | + | 10642 | 0.69 | 0.385893 |
|
Target: 5'- cAUGCCcg--CgaUGCGCGCGCCGAUUu -3' miRNA: 3'- -UGCGGaacaGaaGCGCGCGCGGCUAG- -5' |
|||||||
| 12104 | 3' | -57.5 | NC_003309.1 | + | 39975 | 0.69 | 0.37708 |
|
Target: 5'- uGCGCC--GUCUgccUCGCgGCGCGCUuGUCg -3' miRNA: 3'- -UGCGGaaCAGA---AGCG-CGCGCGGcUAG- -5' |
|||||||
| 12104 | 3' | -57.5 | NC_003309.1 | + | 45907 | 0.7 | 0.364973 |
|
Target: 5'- cCGCCUcgaucaguugacgGUUcagcUCGCGCGCGuuGAUCa -3' miRNA: 3'- uGCGGAa------------CAGa---AGCGCGCGCggCUAG- -5' |
|||||||
| 12104 | 3' | -57.5 | NC_003309.1 | + | 46247 | 0.7 | 0.359867 |
|
Target: 5'- aACGCCUgaacCUUCGCGCGuUGCUcGUCg -3' miRNA: 3'- -UGCGGAaca-GAAGCGCGC-GCGGcUAG- -5' |
|||||||
| 12104 | 3' | -57.5 | NC_003309.1 | + | 18738 | 0.7 | 0.334288 |
|
Target: 5'- gGCGCCUUGUCga-GCGUGaucgucuCGCCGGc- -3' miRNA: 3'- -UGCGGAACAGaagCGCGC-------GCGGCUag -5' |
|||||||
| 12104 | 3' | -57.5 | NC_003309.1 | + | 19964 | 0.7 | 0.330289 |
|
Target: 5'- uGCGCCUgcgcgcgauccgCUUCGaCGCGCG-CGAUCg -3' miRNA: 3'- -UGCGGAaca---------GAAGC-GCGCGCgGCUAG- -5' |
|||||||
| 12104 | 3' | -57.5 | NC_003309.1 | + | 43705 | 0.72 | 0.268388 |
|
Target: 5'- gUGCCaucGUCggcuagcagCGCGCGCGCCaGAUCg -3' miRNA: 3'- uGCGGaa-CAGaa-------GCGCGCGCGG-CUAG- -5' |
|||||||
| 12104 | 3' | -57.5 | NC_003309.1 | + | 3322 | 0.72 | 0.255102 |
|
Target: 5'- cGCGCgaUGUCgagCGCggaaaggcgcaGCGCGUCGAUCa -3' miRNA: 3'- -UGCGgaACAGaa-GCG-----------CGCGCGGCUAG- -5' |
|||||||
| 12104 | 3' | -57.5 | NC_003309.1 | + | 11205 | 0.77 | 0.130916 |
|
Target: 5'- gACGCCUccUG-CUUCGUGCGCaGCCGcUCg -3' miRNA: 3'- -UGCGGA--ACaGAAGCGCGCG-CGGCuAG- -5' |
|||||||
| 12104 | 3' | -57.5 | NC_003309.1 | + | 5574 | 1.09 | 0.000516 |
|
Target: 5'- aACGCCUUGUCUUCGCGCGCGCCGAUCg -3' miRNA: 3'- -UGCGGAACAGAAGCGCGCGCGGCUAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home