miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12109 5' -59.9 NC_003309.1 + 7485 1.04 0.000941
Target:  5'- cGUACGCCGGCCGUCGCC-AACCCGGCg -3'
miRNA:   3'- -CAUGCGGCCGGCAGCGGuUUGGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 51332 0.67 0.439263
Target:  5'- --cUGCCGGCUGcuuaGCCAca-CCGGCc -3'
miRNA:   3'- cauGCGGCCGGCag--CGGUuugGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 15460 0.67 0.436454
Target:  5'- --uUGCCGGCCGgaaguucacggCGUCGAGguagcgcgcgagugUCCGGCg -3'
miRNA:   3'- cauGCGGCCGGCa----------GCGGUUU--------------GGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 39008 0.67 0.429939
Target:  5'- -cAUGCCGuCCGgCGCCAugcagcgcauuGAgCCGGCa -3'
miRNA:   3'- caUGCGGCcGGCaGCGGU-----------UUgGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 8496 0.67 0.429939
Target:  5'- -cACGCUGuaCGUCGCCGAgaucaGCCCa-- -3'
miRNA:   3'- caUGCGGCcgGCAGCGGUU-----UGGGccg -5'
12109 5' -59.9 NC_003309.1 + 52359 0.67 0.429939
Target:  5'- -aGCaGCCGGCaucagcaaacCGUaucucaGCCAAaucgaaACCCGGCa -3'
miRNA:   3'- caUG-CGGCCG----------GCAg-----CGGUU------UGGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 26863 0.67 0.427164
Target:  5'- --uCGCgGGCUgaagucgauccgggGUCGCCGAcaucgagcCCCGGCa -3'
miRNA:   3'- cauGCGgCCGG--------------CAGCGGUUu-------GGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 17581 0.67 0.402679
Target:  5'- -aGCGCCGGCa--CGCCGAagcgcacacgcACCgCGGUc -3'
miRNA:   3'- caUGCGGCCGgcaGCGGUU-----------UGG-GCCG- -5'
12109 5' -59.9 NC_003309.1 + 11314 0.67 0.393839
Target:  5'- -aGCGuCCGGCaUGacggacggcgcaUCGCCAAACgUCGGCa -3'
miRNA:   3'- caUGC-GGCCG-GC------------AGCGGUUUG-GGCCG- -5'
12109 5' -59.9 NC_003309.1 + 25534 0.67 0.439263
Target:  5'- -gACGCaCGGgCGUCGUUucGCCuuuCGGCg -3'
miRNA:   3'- caUGCG-GCCgGCAGCGGuuUGG---GCCG- -5'
12109 5' -59.9 NC_003309.1 + 5248 0.67 0.439263
Target:  5'- -gGCaCCaGGaCGcCGCCAGcACCCGGCg -3'
miRNA:   3'- caUGcGG-CCgGCaGCGGUU-UGGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 22828 0.66 0.448703
Target:  5'- -cACGCCGGUCGcccuguuucUCGUUAcuucuguucgcAGCCCGGa -3'
miRNA:   3'- caUGCGGCCGGC---------AGCGGU-----------UUGGGCCg -5'
12109 5' -59.9 NC_003309.1 + 52724 0.66 0.497488
Target:  5'- aGUugGCgGGCCa--GCCcGGCuaCCGGCu -3'
miRNA:   3'- -CAugCGgCCGGcagCGGuUUG--GGCCG- -5'
12109 5' -59.9 NC_003309.1 + 11576 0.66 0.477672
Target:  5'- -aGCaGCCGcacGCCGUCGgCAGcguCCCGuGCg -3'
miRNA:   3'- caUG-CGGC---CGGCAGCgGUUu--GGGC-CG- -5'
12109 5' -59.9 NC_003309.1 + 5943 0.66 0.46791
Target:  5'- --uCGCCGaugaaaaCGUCGCCGAAgUCGGUg -3'
miRNA:   3'- cauGCGGCcg-----GCAGCGGUUUgGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 10316 0.66 0.46791
Target:  5'- -gGCGCCGacccacGCUGUCGCC--GCCUGcGUc -3'
miRNA:   3'- caUGCGGC------CGGCAGCGGuuUGGGC-CG- -5'
12109 5' -59.9 NC_003309.1 + 15952 0.66 0.458253
Target:  5'- cGUACGUCucGCCGcUCGCCGucuucacgaccAACCCGcaGCa -3'
miRNA:   3'- -CAUGCGGc-CGGC-AGCGGU-----------UUGGGC--CG- -5'
12109 5' -59.9 NC_003309.1 + 1198 0.66 0.448703
Target:  5'- -cGCGCCGucGCCuggGUUGCCGAugaUCGGCu -3'
miRNA:   3'- caUGCGGC--CGG---CAGCGGUUug-GGCCG- -5'
12109 5' -59.9 NC_003309.1 + 19809 0.66 0.448703
Target:  5'- -gACGCCGGCauugagcgucuCGUCGCCcgcguAAAUcgucgcgucgCCGGCc -3'
miRNA:   3'- caUGCGGCCG-----------GCAGCGG-----UUUG----------GGCCG- -5'
12109 5' -59.9 NC_003309.1 + 22487 0.66 0.448703
Target:  5'- -gACGgCGGCCacCGCCG-ACgCGGCg -3'
miRNA:   3'- caUGCgGCCGGcaGCGGUuUGgGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.