miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12109 5' -59.9 NC_003309.1 + 7485 1.04 0.000941
Target:  5'- cGUACGCCGGCCGUCGCC-AACCCGGCg -3'
miRNA:   3'- -CAUGCGGCCGGCAGCGGuUUGGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 27762 0.8 0.052554
Target:  5'- -aGCGCUGGgaGUCGCCAGacgacgcgccGCCCGGCg -3'
miRNA:   3'- caUGCGGCCggCAGCGGUU----------UGGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 11043 0.8 0.057179
Target:  5'- aGUGCGaCCGuGCCcacaGUCGCCAGAaucCCCGGCa -3'
miRNA:   3'- -CAUGC-GGC-CGG----CAGCGGUUU---GGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 11263 0.79 0.067641
Target:  5'- uUGCGCCGcCCGcaUCGCCAGACuCCGGUa -3'
miRNA:   3'- cAUGCGGCcGGC--AGCGGUUUG-GGCCG- -5'
12109 5' -59.9 NC_003309.1 + 22317 0.78 0.079934
Target:  5'- -aGCGCCGGCCGccaUGCCAAGCagcgCGGCc -3'
miRNA:   3'- caUGCGGCCGGCa--GCGGUUUGg---GCCG- -5'
12109 5' -59.9 NC_003309.1 + 22628 0.77 0.094346
Target:  5'- -aGCGCCGggcacGCCGUCGCCA---CCGGCu -3'
miRNA:   3'- caUGCGGC-----CGGCAGCGGUuugGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 9459 0.76 0.113335
Target:  5'- uGUGCGCCcGCCGUCGCgCAccgcauugaaauacGAgCCGGCc -3'
miRNA:   3'- -CAUGCGGcCGGCAGCG-GU--------------UUgGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 47607 0.75 0.123953
Target:  5'- cUGC-CCGGUCGUCGCCGcGCcguCCGGCu -3'
miRNA:   3'- cAUGcGGCCGGCAGCGGUuUG---GGCCG- -5'
12109 5' -59.9 NC_003309.1 + 17056 0.75 0.134399
Target:  5'- cGUGCcguuGuuGGCCGUCcCCGcgAGCCCGGCc -3'
miRNA:   3'- -CAUG----CggCCGGCAGcGGU--UUGGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 19018 0.74 0.153622
Target:  5'- -cGCGCCGucGUCGaUCGCCGcauacuuGCCCGGCu -3'
miRNA:   3'- caUGCGGC--CGGC-AGCGGUu------UGGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 19641 0.73 0.184717
Target:  5'- -cACGcCCGGCCccuUCGCCGggAACCaCGGCc -3'
miRNA:   3'- caUGC-GGCCGGc--AGCGGU--UUGG-GCCG- -5'
12109 5' -59.9 NC_003309.1 + 44236 0.73 0.184717
Target:  5'- uGUGCGcCCGGucCCGUCuGCCAa--CCGGCg -3'
miRNA:   3'- -CAUGC-GGCC--GGCAG-CGGUuugGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 17489 0.72 0.204884
Target:  5'- -gACGCCGGCCucaCGCUcgacggccggaAAGCCCGGg -3'
miRNA:   3'- caUGCGGCCGGca-GCGG-----------UUUGGGCCg -5'
12109 5' -59.9 NC_003309.1 + 13049 0.72 0.204884
Target:  5'- cUGCGCCGGgauaCUGUCGCuCGuggacguGCCCGGUc -3'
miRNA:   3'- cAUGCGGCC----GGCAGCG-GUu------UGGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 16791 0.72 0.210216
Target:  5'- uUGCGCCGGCCGUUGa---ACaCGGCg -3'
miRNA:   3'- cAUGCGGCCGGCAGCgguuUGgGCCG- -5'
12109 5' -59.9 NC_003309.1 + 31728 0.71 0.220676
Target:  5'- -aGCGUgagUGGCCGUgGCCGcaugucuGGCUCGGCg -3'
miRNA:   3'- caUGCG---GCCGGCAgCGGU-------UUGGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 13488 0.71 0.226932
Target:  5'- --cCGCUGgguguaGCCGUCGCCGAAUUgGGCu -3'
miRNA:   3'- cauGCGGC------CGGCAGCGGUUUGGgCCG- -5'
12109 5' -59.9 NC_003309.1 + 31546 0.7 0.257281
Target:  5'- cGUACGCaCGGCgGcaagCGCCAGcucgaacuACgCCGGCc -3'
miRNA:   3'- -CAUGCG-GCCGgCa---GCGGUU--------UG-GGCCG- -5'
12109 5' -59.9 NC_003309.1 + 16407 0.7 0.270321
Target:  5'- -cACGUcgCGGCCGaCGUCGAGaaaaCCGGCg -3'
miRNA:   3'- caUGCG--GCCGGCaGCGGUUUg---GGCCG- -5'
12109 5' -59.9 NC_003309.1 + 17816 0.7 0.277038
Target:  5'- -cGCGUCGGCgauCGUCGCCGuguGCgcguUCGGCg -3'
miRNA:   3'- caUGCGGCCG---GCAGCGGUu--UG----GGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.