miRNA display CGI


Results 21 - 40 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12109 5' -59.9 NC_003309.1 + 19321 0.7 0.277038
Target:  5'- aUACGCCGGaaucgaCGUcaCGCCGAGCgcguuuUCGGCg -3'
miRNA:   3'- cAUGCGGCCg-----GCA--GCGGUUUG------GGCCG- -5'
12109 5' -59.9 NC_003309.1 + 2179 0.7 0.290871
Target:  5'- -gGCGCaccaCGUCGUCAuuGCCCGGCa -3'
miRNA:   3'- caUGCGgccgGCAGCGGUu-UGGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 6530 0.69 0.305239
Target:  5'- -gGCGCCagccuugcucucGGCCGcUUGCCGcgcGCCCGGg -3'
miRNA:   3'- caUGCGG------------CCGGC-AGCGGUu--UGGGCCg -5'
12109 5' -59.9 NC_003309.1 + 22443 0.69 0.305239
Target:  5'- -cACGCU-GCCGgCGUCGAGCgCGGCg -3'
miRNA:   3'- caUGCGGcCGGCaGCGGUUUGgGCCG- -5'
12109 5' -59.9 NC_003309.1 + 23386 0.69 0.31188
Target:  5'- uGUGCGCC-GCCGauagcucuucuUCGaugcgcagcagguUCAGGCCCGGCa -3'
miRNA:   3'- -CAUGCGGcCGGC-----------AGC-------------GGUUUGGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 38859 0.69 0.320145
Target:  5'- cGUGCGCuCGGCCGaacgggCGUCucGCUCGaGCu -3'
miRNA:   3'- -CAUGCG-GCCGGCa-----GCGGuuUGGGC-CG- -5'
12109 5' -59.9 NC_003309.1 + 46331 0.69 0.320145
Target:  5'- cGUACGCgugccGCCGUacCGCCGAGCaCGGCc -3'
miRNA:   3'- -CAUGCGgc---CGGCA--GCGGUUUGgGCCG- -5'
12109 5' -59.9 NC_003309.1 + 9980 0.69 0.326258
Target:  5'- cUGCGCCGaacucuugcccauGCCG-CGCgCGAuagcauccgcgacACCCGGCa -3'
miRNA:   3'- cAUGCGGC-------------CGGCaGCG-GUU-------------UGGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 45258 0.69 0.33559
Target:  5'- -aAUGCCGGCCGccgcgugCGCCucgaauACgUCGGCg -3'
miRNA:   3'- caUGCGGCCGGCa------GCGGuu----UG-GGCCG- -5'
12109 5' -59.9 NC_003309.1 + 18714 0.69 0.336376
Target:  5'- --uCGCCGGCUGcggcgcggauacggcCGCCG-AUCCGGCg -3'
miRNA:   3'- cauGCGGCCGGCa--------------GCGGUuUGGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 6262 0.68 0.343514
Target:  5'- uGUcCGCauGCuCGUCGUCGAACCCuGCg -3'
miRNA:   3'- -CAuGCGgcCG-GCAGCGGUUUGGGcCG- -5'
12109 5' -59.9 NC_003309.1 + 10743 0.68 0.37569
Target:  5'- -aGCGCCGuCCGUCGCUgcugcgcGAGCgCGaGCg -3'
miRNA:   3'- caUGCGGCcGGCAGCGG-------UUUGgGC-CG- -5'
12109 5' -59.9 NC_003309.1 + 10514 0.68 0.37569
Target:  5'- ---aGCCGGCCGUCaacGCCGAcugcaucGCgaGGCu -3'
miRNA:   3'- caugCGGCCGGCAG---CGGUU-------UGggCCG- -5'
12109 5' -59.9 NC_003309.1 + 28360 0.68 0.385126
Target:  5'- -aGCGCacgCGGCCaauaGCCGAACCCcGCg -3'
miRNA:   3'- caUGCG---GCCGGcag-CGGUUUGGGcCG- -5'
12109 5' -59.9 NC_003309.1 + 168 0.68 0.388596
Target:  5'- --cCGCCGcgauuuuccgcGCCGUCGgcuuggguuuucugcCCcGGCCCGGCa -3'
miRNA:   3'- cauGCGGC-----------CGGCAGC---------------GGuUUGGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 11314 0.67 0.393839
Target:  5'- -aGCGuCCGGCaUGacggacggcgcaUCGCCAAACgUCGGCa -3'
miRNA:   3'- caUGC-GGCCG-GC------------AGCGGUUUG-GGCCG- -5'
12109 5' -59.9 NC_003309.1 + 17581 0.67 0.402679
Target:  5'- -aGCGCCGGCa--CGCCGAagcgcacacgcACCgCGGUc -3'
miRNA:   3'- caUGCGGCCGgcaGCGGUU-----------UGG-GCCG- -5'
12109 5' -59.9 NC_003309.1 + 26863 0.67 0.427164
Target:  5'- --uCGCgGGCUgaagucgauccgggGUCGCCGAcaucgagcCCCGGCa -3'
miRNA:   3'- cauGCGgCCGG--------------CAGCGGUUu-------GGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 52359 0.67 0.429939
Target:  5'- -aGCaGCCGGCaucagcaaacCGUaucucaGCCAAaucgaaACCCGGCa -3'
miRNA:   3'- caUG-CGGCCG----------GCAg-----CGGUU------UGGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 39008 0.67 0.429939
Target:  5'- -cAUGCCGuCCGgCGCCAugcagcgcauuGAgCCGGCa -3'
miRNA:   3'- caUGCGGCcGGCaGCGGU-----------UUgGGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.