miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12109 5' -59.9 NC_003309.1 + 168 0.68 0.388596
Target:  5'- --cCGCCGcgauuuuccgcGCCGUCGgcuuggguuuucugcCCcGGCCCGGCa -3'
miRNA:   3'- cauGCGGC-----------CGGCAGC---------------GGuUUGGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 28360 0.68 0.385126
Target:  5'- -aGCGCacgCGGCCaauaGCCGAACCCcGCg -3'
miRNA:   3'- caUGCG---GCCGGcag-CGGUUUGGGcCG- -5'
12109 5' -59.9 NC_003309.1 + 10743 0.68 0.37569
Target:  5'- -aGCGCCGuCCGUCGCUgcugcgcGAGCgCGaGCg -3'
miRNA:   3'- caUGCGGCcGGCAGCGG-------UUUGgGC-CG- -5'
12109 5' -59.9 NC_003309.1 + 10514 0.68 0.37569
Target:  5'- ---aGCCGGCCGUCaacGCCGAcugcaucGCgaGGCu -3'
miRNA:   3'- caugCGGCCGGCAG---CGGUU-------UGggCCG- -5'
12109 5' -59.9 NC_003309.1 + 6262 0.68 0.343514
Target:  5'- uGUcCGCauGCuCGUCGUCGAACCCuGCg -3'
miRNA:   3'- -CAuGCGgcCG-GCAGCGGUUUGGGcCG- -5'
12109 5' -59.9 NC_003309.1 + 18714 0.69 0.336376
Target:  5'- --uCGCCGGCUGcggcgcggauacggcCGCCG-AUCCGGCg -3'
miRNA:   3'- cauGCGGCCGGCa--------------GCGGUuUGGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 45258 0.69 0.33559
Target:  5'- -aAUGCCGGCCGccgcgugCGCCucgaauACgUCGGCg -3'
miRNA:   3'- caUGCGGCCGGCa------GCGGuu----UG-GGCCG- -5'
12109 5' -59.9 NC_003309.1 + 9980 0.69 0.326258
Target:  5'- cUGCGCCGaacucuugcccauGCCG-CGCgCGAuagcauccgcgacACCCGGCa -3'
miRNA:   3'- cAUGCGGC-------------CGGCaGCG-GUU-------------UGGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 46331 0.69 0.320145
Target:  5'- cGUACGCgugccGCCGUacCGCCGAGCaCGGCc -3'
miRNA:   3'- -CAUGCGgc---CGGCA--GCGGUUUGgGCCG- -5'
12109 5' -59.9 NC_003309.1 + 38859 0.69 0.320145
Target:  5'- cGUGCGCuCGGCCGaacgggCGUCucGCUCGaGCu -3'
miRNA:   3'- -CAUGCG-GCCGGCa-----GCGGuuUGGGC-CG- -5'
12109 5' -59.9 NC_003309.1 + 23386 0.69 0.31188
Target:  5'- uGUGCGCC-GCCGauagcucuucuUCGaugcgcagcagguUCAGGCCCGGCa -3'
miRNA:   3'- -CAUGCGGcCGGC-----------AGC-------------GGUUUGGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 6530 0.69 0.305239
Target:  5'- -gGCGCCagccuugcucucGGCCGcUUGCCGcgcGCCCGGg -3'
miRNA:   3'- caUGCGG------------CCGGC-AGCGGUu--UGGGCCg -5'
12109 5' -59.9 NC_003309.1 + 22443 0.69 0.305239
Target:  5'- -cACGCU-GCCGgCGUCGAGCgCGGCg -3'
miRNA:   3'- caUGCGGcCGGCaGCGGUUUGgGCCG- -5'
12109 5' -59.9 NC_003309.1 + 2179 0.7 0.290871
Target:  5'- -gGCGCaccaCGUCGUCAuuGCCCGGCa -3'
miRNA:   3'- caUGCGgccgGCAGCGGUu-UGGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 17816 0.7 0.277038
Target:  5'- -cGCGUCGGCgauCGUCGCCGuguGCgcguUCGGCg -3'
miRNA:   3'- caUGCGGCCG---GCAGCGGUu--UG----GGCCG- -5'
12109 5' -59.9 NC_003309.1 + 19321 0.7 0.277038
Target:  5'- aUACGCCGGaaucgaCGUcaCGCCGAGCgcguuuUCGGCg -3'
miRNA:   3'- cAUGCGGCCg-----GCA--GCGGUUUG------GGCCG- -5'
12109 5' -59.9 NC_003309.1 + 16407 0.7 0.270321
Target:  5'- -cACGUcgCGGCCGaCGUCGAGaaaaCCGGCg -3'
miRNA:   3'- caUGCG--GCCGGCaGCGGUUUg---GGCCG- -5'
12109 5' -59.9 NC_003309.1 + 31546 0.7 0.257281
Target:  5'- cGUACGCaCGGCgGcaagCGCCAGcucgaacuACgCCGGCc -3'
miRNA:   3'- -CAUGCG-GCCGgCa---GCGGUU--------UG-GGCCG- -5'
12109 5' -59.9 NC_003309.1 + 13488 0.71 0.226932
Target:  5'- --cCGCUGgguguaGCCGUCGCCGAAUUgGGCu -3'
miRNA:   3'- cauGCGGC------CGGCAGCGGUUUGGgCCG- -5'
12109 5' -59.9 NC_003309.1 + 31728 0.71 0.220676
Target:  5'- -aGCGUgagUGGCCGUgGCCGcaugucuGGCUCGGCg -3'
miRNA:   3'- caUGCG---GCCGGCAgCGGU-------UUGGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.