miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12109 5' -59.9 NC_003309.1 + 15460 0.67 0.436454
Target:  5'- --uUGCCGGCCGgaaguucacggCGUCGAGguagcgcgcgagugUCCGGCg -3'
miRNA:   3'- cauGCGGCCGGCa----------GCGGUUU--------------GGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 15952 0.66 0.458253
Target:  5'- cGUACGUCucGCCGcUCGCCGucuucacgaccAACCCGcaGCa -3'
miRNA:   3'- -CAUGCGGc-CGGC-AGCGGU-----------UUGGGC--CG- -5'
12109 5' -59.9 NC_003309.1 + 16407 0.7 0.270321
Target:  5'- -cACGUcgCGGCCGaCGUCGAGaaaaCCGGCg -3'
miRNA:   3'- caUGCG--GCCGGCaGCGGUUUg---GGCCG- -5'
12109 5' -59.9 NC_003309.1 + 16791 0.72 0.210216
Target:  5'- uUGCGCCGGCCGUUGa---ACaCGGCg -3'
miRNA:   3'- cAUGCGGCCGGCAGCgguuUGgGCCG- -5'
12109 5' -59.9 NC_003309.1 + 17056 0.75 0.134399
Target:  5'- cGUGCcguuGuuGGCCGUCcCCGcgAGCCCGGCc -3'
miRNA:   3'- -CAUG----CggCCGGCAGcGGU--UUGGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 17489 0.72 0.204884
Target:  5'- -gACGCCGGCCucaCGCUcgacggccggaAAGCCCGGg -3'
miRNA:   3'- caUGCGGCCGGca-GCGG-----------UUUGGGCCg -5'
12109 5' -59.9 NC_003309.1 + 17581 0.67 0.402679
Target:  5'- -aGCGCCGGCa--CGCCGAagcgcacacgcACCgCGGUc -3'
miRNA:   3'- caUGCGGCCGgcaGCGGUU-----------UGG-GCCG- -5'
12109 5' -59.9 NC_003309.1 + 17816 0.7 0.277038
Target:  5'- -cGCGUCGGCgauCGUCGCCGuguGCgcguUCGGCg -3'
miRNA:   3'- caUGCGGCCG---GCAGCGGUu--UG----GGCCG- -5'
12109 5' -59.9 NC_003309.1 + 18714 0.69 0.336376
Target:  5'- --uCGCCGGCUGcggcgcggauacggcCGCCG-AUCCGGCg -3'
miRNA:   3'- cauGCGGCCGGCa--------------GCGGUuUGGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 19018 0.74 0.153622
Target:  5'- -cGCGCCGucGUCGaUCGCCGcauacuuGCCCGGCu -3'
miRNA:   3'- caUGCGGC--CGGC-AGCGGUu------UGGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 19321 0.7 0.277038
Target:  5'- aUACGCCGGaaucgaCGUcaCGCCGAGCgcguuuUCGGCg -3'
miRNA:   3'- cAUGCGGCCg-----GCA--GCGGUUUG------GGCCG- -5'
12109 5' -59.9 NC_003309.1 + 19641 0.73 0.184717
Target:  5'- -cACGcCCGGCCccuUCGCCGggAACCaCGGCc -3'
miRNA:   3'- caUGC-GGCCGGc--AGCGGU--UUGG-GCCG- -5'
12109 5' -59.9 NC_003309.1 + 19809 0.66 0.448703
Target:  5'- -gACGCCGGCauugagcgucuCGUCGCCcgcguAAAUcgucgcgucgCCGGCc -3'
miRNA:   3'- caUGCGGCCG-----------GCAGCGG-----UUUG----------GGCCG- -5'
12109 5' -59.9 NC_003309.1 + 22317 0.78 0.079934
Target:  5'- -aGCGCCGGCCGccaUGCCAAGCagcgCGGCc -3'
miRNA:   3'- caUGCGGCCGGCa--GCGGUUUGg---GCCG- -5'
12109 5' -59.9 NC_003309.1 + 22443 0.69 0.305239
Target:  5'- -cACGCU-GCCGgCGUCGAGCgCGGCg -3'
miRNA:   3'- caUGCGGcCGGCaGCGGUUUGgGCCG- -5'
12109 5' -59.9 NC_003309.1 + 22487 0.66 0.448703
Target:  5'- -gACGgCGGCCacCGCCG-ACgCGGCg -3'
miRNA:   3'- caUGCgGCCGGcaGCGGUuUGgGCCG- -5'
12109 5' -59.9 NC_003309.1 + 22628 0.77 0.094346
Target:  5'- -aGCGCCGggcacGCCGUCGCCA---CCGGCu -3'
miRNA:   3'- caUGCGGC-----CGGCAGCGGUuugGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 22828 0.66 0.448703
Target:  5'- -cACGCCGGUCGcccuguuucUCGUUAcuucuguucgcAGCCCGGa -3'
miRNA:   3'- caUGCGGCCGGC---------AGCGGU-----------UUGGGCCg -5'
12109 5' -59.9 NC_003309.1 + 23386 0.69 0.31188
Target:  5'- uGUGCGCC-GCCGauagcucuucuUCGaugcgcagcagguUCAGGCCCGGCa -3'
miRNA:   3'- -CAUGCGGcCGGC-----------AGC-------------GGUUUGGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 25367 0.66 0.497488
Target:  5'- -gGCGUCGGUC-UgGCCGGAuauugUCCGGCc -3'
miRNA:   3'- caUGCGGCCGGcAgCGGUUU-----GGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.