Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12109 | 5' | -59.9 | NC_003309.1 | + | 168 | 0.68 | 0.388596 |
Target: 5'- --cCGCCGcgauuuuccgcGCCGUCGgcuuggguuuucugcCCcGGCCCGGCa -3' miRNA: 3'- cauGCGGC-----------CGGCAGC---------------GGuUUGGGCCG- -5' |
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12109 | 5' | -59.9 | NC_003309.1 | + | 1198 | 0.66 | 0.448703 |
Target: 5'- -cGCGCCGucGCCuggGUUGCCGAugaUCGGCu -3' miRNA: 3'- caUGCGGC--CGG---CAGCGGUUug-GGCCG- -5' |
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12109 | 5' | -59.9 | NC_003309.1 | + | 2179 | 0.7 | 0.290871 |
Target: 5'- -gGCGCaccaCGUCGUCAuuGCCCGGCa -3' miRNA: 3'- caUGCGgccgGCAGCGGUu-UGGGCCG- -5' |
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12109 | 5' | -59.9 | NC_003309.1 | + | 5248 | 0.67 | 0.439263 |
Target: 5'- -gGCaCCaGGaCGcCGCCAGcACCCGGCg -3' miRNA: 3'- caUGcGG-CCgGCaGCGGUU-UGGGCCG- -5' |
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12109 | 5' | -59.9 | NC_003309.1 | + | 5943 | 0.66 | 0.46791 |
Target: 5'- --uCGCCGaugaaaaCGUCGCCGAAgUCGGUg -3' miRNA: 3'- cauGCGGCcg-----GCAGCGGUUUgGGCCG- -5' |
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12109 | 5' | -59.9 | NC_003309.1 | + | 6262 | 0.68 | 0.343514 |
Target: 5'- uGUcCGCauGCuCGUCGUCGAACCCuGCg -3' miRNA: 3'- -CAuGCGgcCG-GCAGCGGUUUGGGcCG- -5' |
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12109 | 5' | -59.9 | NC_003309.1 | + | 6530 | 0.69 | 0.305239 |
Target: 5'- -gGCGCCagccuugcucucGGCCGcUUGCCGcgcGCCCGGg -3' miRNA: 3'- caUGCGG------------CCGGC-AGCGGUu--UGGGCCg -5' |
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12109 | 5' | -59.9 | NC_003309.1 | + | 7485 | 1.04 | 0.000941 |
Target: 5'- cGUACGCCGGCCGUCGCC-AACCCGGCg -3' miRNA: 3'- -CAUGCGGCCGGCAGCGGuUUGGGCCG- -5' |
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12109 | 5' | -59.9 | NC_003309.1 | + | 8496 | 0.67 | 0.429939 |
Target: 5'- -cACGCUGuaCGUCGCCGAgaucaGCCCa-- -3' miRNA: 3'- caUGCGGCcgGCAGCGGUU-----UGGGccg -5' |
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12109 | 5' | -59.9 | NC_003309.1 | + | 9459 | 0.76 | 0.113335 |
Target: 5'- uGUGCGCCcGCCGUCGCgCAccgcauugaaauacGAgCCGGCc -3' miRNA: 3'- -CAUGCGGcCGGCAGCG-GU--------------UUgGGCCG- -5' |
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12109 | 5' | -59.9 | NC_003309.1 | + | 9980 | 0.69 | 0.326258 |
Target: 5'- cUGCGCCGaacucuugcccauGCCG-CGCgCGAuagcauccgcgacACCCGGCa -3' miRNA: 3'- cAUGCGGC-------------CGGCaGCG-GUU-------------UGGGCCG- -5' |
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12109 | 5' | -59.9 | NC_003309.1 | + | 10316 | 0.66 | 0.46791 |
Target: 5'- -gGCGCCGacccacGCUGUCGCC--GCCUGcGUc -3' miRNA: 3'- caUGCGGC------CGGCAGCGGuuUGGGC-CG- -5' |
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12109 | 5' | -59.9 | NC_003309.1 | + | 10514 | 0.68 | 0.37569 |
Target: 5'- ---aGCCGGCCGUCaacGCCGAcugcaucGCgaGGCu -3' miRNA: 3'- caugCGGCCGGCAG---CGGUU-------UGggCCG- -5' |
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12109 | 5' | -59.9 | NC_003309.1 | + | 10743 | 0.68 | 0.37569 |
Target: 5'- -aGCGCCGuCCGUCGCUgcugcgcGAGCgCGaGCg -3' miRNA: 3'- caUGCGGCcGGCAGCGG-------UUUGgGC-CG- -5' |
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12109 | 5' | -59.9 | NC_003309.1 | + | 11043 | 0.8 | 0.057179 |
Target: 5'- aGUGCGaCCGuGCCcacaGUCGCCAGAaucCCCGGCa -3' miRNA: 3'- -CAUGC-GGC-CGG----CAGCGGUUU---GGGCCG- -5' |
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12109 | 5' | -59.9 | NC_003309.1 | + | 11263 | 0.79 | 0.067641 |
Target: 5'- uUGCGCCGcCCGcaUCGCCAGACuCCGGUa -3' miRNA: 3'- cAUGCGGCcGGC--AGCGGUUUG-GGCCG- -5' |
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12109 | 5' | -59.9 | NC_003309.1 | + | 11314 | 0.67 | 0.393839 |
Target: 5'- -aGCGuCCGGCaUGacggacggcgcaUCGCCAAACgUCGGCa -3' miRNA: 3'- caUGC-GGCCG-GC------------AGCGGUUUG-GGCCG- -5' |
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12109 | 5' | -59.9 | NC_003309.1 | + | 11576 | 0.66 | 0.477672 |
Target: 5'- -aGCaGCCGcacGCCGUCGgCAGcguCCCGuGCg -3' miRNA: 3'- caUG-CGGC---CGGCAGCgGUUu--GGGC-CG- -5' |
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12109 | 5' | -59.9 | NC_003309.1 | + | 13049 | 0.72 | 0.204884 |
Target: 5'- cUGCGCCGGgauaCUGUCGCuCGuggacguGCCCGGUc -3' miRNA: 3'- cAUGCGGCC----GGCAGCG-GUu------UGGGCCG- -5' |
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12109 | 5' | -59.9 | NC_003309.1 | + | 13488 | 0.71 | 0.226932 |
Target: 5'- --cCGCUGgguguaGCCGUCGCCGAAUUgGGCu -3' miRNA: 3'- cauGCGGC------CGGCAGCGGUUUGGgCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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