miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12109 5' -59.9 NC_003309.1 + 168 0.68 0.388596
Target:  5'- --cCGCCGcgauuuuccgcGCCGUCGgcuuggguuuucugcCCcGGCCCGGCa -3'
miRNA:   3'- cauGCGGC-----------CGGCAGC---------------GGuUUGGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 1198 0.66 0.448703
Target:  5'- -cGCGCCGucGCCuggGUUGCCGAugaUCGGCu -3'
miRNA:   3'- caUGCGGC--CGG---CAGCGGUUug-GGCCG- -5'
12109 5' -59.9 NC_003309.1 + 2179 0.7 0.290871
Target:  5'- -gGCGCaccaCGUCGUCAuuGCCCGGCa -3'
miRNA:   3'- caUGCGgccgGCAGCGGUu-UGGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 5248 0.67 0.439263
Target:  5'- -gGCaCCaGGaCGcCGCCAGcACCCGGCg -3'
miRNA:   3'- caUGcGG-CCgGCaGCGGUU-UGGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 5943 0.66 0.46791
Target:  5'- --uCGCCGaugaaaaCGUCGCCGAAgUCGGUg -3'
miRNA:   3'- cauGCGGCcg-----GCAGCGGUUUgGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 6262 0.68 0.343514
Target:  5'- uGUcCGCauGCuCGUCGUCGAACCCuGCg -3'
miRNA:   3'- -CAuGCGgcCG-GCAGCGGUUUGGGcCG- -5'
12109 5' -59.9 NC_003309.1 + 6530 0.69 0.305239
Target:  5'- -gGCGCCagccuugcucucGGCCGcUUGCCGcgcGCCCGGg -3'
miRNA:   3'- caUGCGG------------CCGGC-AGCGGUu--UGGGCCg -5'
12109 5' -59.9 NC_003309.1 + 7485 1.04 0.000941
Target:  5'- cGUACGCCGGCCGUCGCC-AACCCGGCg -3'
miRNA:   3'- -CAUGCGGCCGGCAGCGGuUUGGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 8496 0.67 0.429939
Target:  5'- -cACGCUGuaCGUCGCCGAgaucaGCCCa-- -3'
miRNA:   3'- caUGCGGCcgGCAGCGGUU-----UGGGccg -5'
12109 5' -59.9 NC_003309.1 + 9459 0.76 0.113335
Target:  5'- uGUGCGCCcGCCGUCGCgCAccgcauugaaauacGAgCCGGCc -3'
miRNA:   3'- -CAUGCGGcCGGCAGCG-GU--------------UUgGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 9980 0.69 0.326258
Target:  5'- cUGCGCCGaacucuugcccauGCCG-CGCgCGAuagcauccgcgacACCCGGCa -3'
miRNA:   3'- cAUGCGGC-------------CGGCaGCG-GUU-------------UGGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 10316 0.66 0.46791
Target:  5'- -gGCGCCGacccacGCUGUCGCC--GCCUGcGUc -3'
miRNA:   3'- caUGCGGC------CGGCAGCGGuuUGGGC-CG- -5'
12109 5' -59.9 NC_003309.1 + 10514 0.68 0.37569
Target:  5'- ---aGCCGGCCGUCaacGCCGAcugcaucGCgaGGCu -3'
miRNA:   3'- caugCGGCCGGCAG---CGGUU-------UGggCCG- -5'
12109 5' -59.9 NC_003309.1 + 10743 0.68 0.37569
Target:  5'- -aGCGCCGuCCGUCGCUgcugcgcGAGCgCGaGCg -3'
miRNA:   3'- caUGCGGCcGGCAGCGG-------UUUGgGC-CG- -5'
12109 5' -59.9 NC_003309.1 + 11043 0.8 0.057179
Target:  5'- aGUGCGaCCGuGCCcacaGUCGCCAGAaucCCCGGCa -3'
miRNA:   3'- -CAUGC-GGC-CGG----CAGCGGUUU---GGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 11263 0.79 0.067641
Target:  5'- uUGCGCCGcCCGcaUCGCCAGACuCCGGUa -3'
miRNA:   3'- cAUGCGGCcGGC--AGCGGUUUG-GGCCG- -5'
12109 5' -59.9 NC_003309.1 + 11314 0.67 0.393839
Target:  5'- -aGCGuCCGGCaUGacggacggcgcaUCGCCAAACgUCGGCa -3'
miRNA:   3'- caUGC-GGCCG-GC------------AGCGGUUUG-GGCCG- -5'
12109 5' -59.9 NC_003309.1 + 11576 0.66 0.477672
Target:  5'- -aGCaGCCGcacGCCGUCGgCAGcguCCCGuGCg -3'
miRNA:   3'- caUG-CGGC---CGGCAGCgGUUu--GGGC-CG- -5'
12109 5' -59.9 NC_003309.1 + 13049 0.72 0.204884
Target:  5'- cUGCGCCGGgauaCUGUCGCuCGuggacguGCCCGGUc -3'
miRNA:   3'- cAUGCGGCC----GGCAGCG-GUu------UGGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 13488 0.71 0.226932
Target:  5'- --cCGCUGgguguaGCCGUCGCCGAAUUgGGCu -3'
miRNA:   3'- cauGCGGC------CGGCAGCGGUUUGGgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.