miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12109 5' -59.9 NC_003309.1 + 52724 0.66 0.497488
Target:  5'- aGUugGCgGGCCa--GCCcGGCuaCCGGCu -3'
miRNA:   3'- -CAugCGgCCGGcagCGGuUUG--GGCCG- -5'
12109 5' -59.9 NC_003309.1 + 52359 0.67 0.429939
Target:  5'- -aGCaGCCGGCaucagcaaacCGUaucucaGCCAAaucgaaACCCGGCa -3'
miRNA:   3'- caUG-CGGCCG----------GCAg-----CGGUU------UGGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 51332 0.67 0.439263
Target:  5'- --cUGCCGGCUGcuuaGCCAca-CCGGCc -3'
miRNA:   3'- cauGCGGCCGGCag--CGGUuugGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 47607 0.75 0.123953
Target:  5'- cUGC-CCGGUCGUCGCCGcGCcguCCGGCu -3'
miRNA:   3'- cAUGcGGCCGGCAGCGGUuUG---GGCCG- -5'
12109 5' -59.9 NC_003309.1 + 46331 0.69 0.320145
Target:  5'- cGUACGCgugccGCCGUacCGCCGAGCaCGGCc -3'
miRNA:   3'- -CAUGCGgc---CGGCA--GCGGUUUGgGCCG- -5'
12109 5' -59.9 NC_003309.1 + 45258 0.69 0.33559
Target:  5'- -aAUGCCGGCCGccgcgugCGCCucgaauACgUCGGCg -3'
miRNA:   3'- caUGCGGCCGGCa------GCGGuu----UG-GGCCG- -5'
12109 5' -59.9 NC_003309.1 + 44236 0.73 0.184717
Target:  5'- uGUGCGcCCGGucCCGUCuGCCAa--CCGGCg -3'
miRNA:   3'- -CAUGC-GGCC--GGCAG-CGGUuugGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 39008 0.67 0.429939
Target:  5'- -cAUGCCGuCCGgCGCCAugcagcgcauuGAgCCGGCa -3'
miRNA:   3'- caUGCGGCcGGCaGCGGU-----------UUgGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 38859 0.69 0.320145
Target:  5'- cGUGCGCuCGGCCGaacgggCGUCucGCUCGaGCu -3'
miRNA:   3'- -CAUGCG-GCCGGCa-----GCGGuuUGGGC-CG- -5'
12109 5' -59.9 NC_003309.1 + 31728 0.71 0.220676
Target:  5'- -aGCGUgagUGGCCGUgGCCGcaugucuGGCUCGGCg -3'
miRNA:   3'- caUGCG---GCCGGCAgCGGU-------UUGGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 31546 0.7 0.257281
Target:  5'- cGUACGCaCGGCgGcaagCGCCAGcucgaacuACgCCGGCc -3'
miRNA:   3'- -CAUGCG-GCCGgCa---GCGGUU--------UG-GGCCG- -5'
12109 5' -59.9 NC_003309.1 + 28360 0.68 0.385126
Target:  5'- -aGCGCacgCGGCCaauaGCCGAACCCcGCg -3'
miRNA:   3'- caUGCG---GCCGGcag-CGGUUUGGGcCG- -5'
12109 5' -59.9 NC_003309.1 + 27762 0.8 0.052554
Target:  5'- -aGCGCUGGgaGUCGCCAGacgacgcgccGCCCGGCg -3'
miRNA:   3'- caUGCGGCCggCAGCGGUU----------UGGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 26863 0.67 0.427164
Target:  5'- --uCGCgGGCUgaagucgauccgggGUCGCCGAcaucgagcCCCGGCa -3'
miRNA:   3'- cauGCGgCCGG--------------CAGCGGUUu-------GGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 25534 0.67 0.439263
Target:  5'- -gACGCaCGGgCGUCGUUucGCCuuuCGGCg -3'
miRNA:   3'- caUGCG-GCCgGCAGCGGuuUGG---GCCG- -5'
12109 5' -59.9 NC_003309.1 + 25367 0.66 0.497488
Target:  5'- -gGCGUCGGUC-UgGCCGGAuauugUCCGGCc -3'
miRNA:   3'- caUGCGGCCGGcAgCGGUUU-----GGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 23386 0.69 0.31188
Target:  5'- uGUGCGCC-GCCGauagcucuucuUCGaugcgcagcagguUCAGGCCCGGCa -3'
miRNA:   3'- -CAUGCGGcCGGC-----------AGC-------------GGUUUGGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 22828 0.66 0.448703
Target:  5'- -cACGCCGGUCGcccuguuucUCGUUAcuucuguucgcAGCCCGGa -3'
miRNA:   3'- caUGCGGCCGGC---------AGCGGU-----------UUGGGCCg -5'
12109 5' -59.9 NC_003309.1 + 22628 0.77 0.094346
Target:  5'- -aGCGCCGggcacGCCGUCGCCA---CCGGCu -3'
miRNA:   3'- caUGCGGC-----CGGCAGCGGUuugGGCCG- -5'
12109 5' -59.9 NC_003309.1 + 22487 0.66 0.448703
Target:  5'- -gACGgCGGCCacCGCCG-ACgCGGCg -3'
miRNA:   3'- caUGCgGCCGGcaGCGGUuUGgGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.