miRNA display CGI


Results 1 - 20 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12110 5' -56.6 NC_003309.1 + 7667 1.08 0.000964
Target:  5'- cUCCGAGCACACGAUCGAUCGCGCGCGc -3'
miRNA:   3'- -AGGCUCGUGUGCUAGCUAGCGCGCGC- -5'
12110 5' -56.6 NC_003309.1 + 44775 0.75 0.227098
Target:  5'- aCCGAGCGCGCGAggcaaauagUCGA--GCGCGUa -3'
miRNA:   3'- aGGCUCGUGUGCU---------AGCUagCGCGCGc -5'
12110 5' -56.6 NC_003309.1 + 37329 0.74 0.251557
Target:  5'- aUCaCGGGCGucuaccUGCGcgCGAUCGUGCGCGa -3'
miRNA:   3'- -AG-GCUCGU------GUGCuaGCUAGCGCGCGC- -5'
12110 5' -56.6 NC_003309.1 + 52698 0.74 0.251557
Target:  5'- cUCCGAGUugGCGAUUGG-CGUGUGUu -3'
miRNA:   3'- -AGGCUCGugUGCUAGCUaGCGCGCGc -5'
12110 5' -56.6 NC_003309.1 + 49468 0.73 0.292259
Target:  5'- gCCGAGCACGCGcgaaugcCGAUUGCGaUGCa -3'
miRNA:   3'- aGGCUCGUGUGCua-----GCUAGCGC-GCGc -5'
12110 5' -56.6 NC_003309.1 + 12497 0.72 0.30469
Target:  5'- gUCGcuCACGCGAUUGAuggccugauucagcUCGCGCGCGu -3'
miRNA:   3'- aGGCucGUGUGCUAGCU--------------AGCGCGCGC- -5'
12110 5' -56.6 NC_003309.1 + 19961 0.72 0.314467
Target:  5'- gCCu-GCGCGCGAuccgcuUCGA-CGCGCGCGa -3'
miRNA:   3'- aGGcuCGUGUGCU------AGCUaGCGCGCGC- -5'
12110 5' -56.6 NC_003309.1 + 19300 0.71 0.379794
Target:  5'- gCCGAGCGCGuuuuCGGcgCGcaCGCGCGCGa -3'
miRNA:   3'- aGGCUCGUGU----GCUa-GCuaGCGCGCGC- -5'
12110 5' -56.6 NC_003309.1 + 53060 0.71 0.371149
Target:  5'- aUCCucGCGCAUGA-CGAUUGCcGCGCa -3'
miRNA:   3'- -AGGcuCGUGUGCUaGCUAGCG-CGCGc -5'
12110 5' -56.6 NC_003309.1 + 48699 0.7 0.415697
Target:  5'- gCCGcGUGCGCGAUCGcugCGCuGCGCu -3'
miRNA:   3'- aGGCuCGUGUGCUAGCua-GCG-CGCGc -5'
12110 5' -56.6 NC_003309.1 + 10974 0.7 0.443949
Target:  5'- aCCGAGCGCAUcAUCGugccCGUacGCGCGa -3'
miRNA:   3'- aGGCUCGUGUGcUAGCua--GCG--CGCGC- -5'
12110 5' -56.6 NC_003309.1 + 46311 0.7 0.424993
Target:  5'- gCCGAGCACggccuucuGCGcacgCGAgCGCGCGUGc -3'
miRNA:   3'- aGGCUCGUG--------UGCua--GCUaGCGCGCGC- -5'
12110 5' -56.6 NC_003309.1 + 53008 0.7 0.424993
Target:  5'- cUCGuGCGCAUG-UUGAUCGCaGUGCGa -3'
miRNA:   3'- aGGCuCGUGUGCuAGCUAGCG-CGCGC- -5'
12110 5' -56.6 NC_003309.1 + 11241 0.7 0.434411
Target:  5'- cUCCG-GUACGCGGacugcgcgUCGucugcCGCGCGCGa -3'
miRNA:   3'- -AGGCuCGUGUGCU--------AGCua---GCGCGCGC- -5'
12110 5' -56.6 NC_003309.1 + 43543 0.7 0.406527
Target:  5'- gUCUGcacGCGCACGccGUCGGcggccaUCGCGCGCa -3'
miRNA:   3'- -AGGCu--CGUGUGC--UAGCU------AGCGCGCGc -5'
12110 5' -56.6 NC_003309.1 + 10500 0.7 0.406527
Target:  5'- gCCGAcuGCAuCGCGAggcuuucgCGcAUCGCGCGCa -3'
miRNA:   3'- aGGCU--CGU-GUGCUa-------GC-UAGCGCGCGc -5'
12110 5' -56.6 NC_003309.1 + 43209 0.7 0.41018
Target:  5'- cUUCGAGCAUcCGAUCGucguuggucacguccGUCGCGCGa- -3'
miRNA:   3'- -AGGCUCGUGuGCUAGC---------------UAGCGCGCgc -5'
12110 5' -56.6 NC_003309.1 + 50273 0.69 0.463372
Target:  5'- gCCGAaacuGCGCucgaGAUCGcgaaagcugaucGUCGCGCGCGc -3'
miRNA:   3'- aGGCU----CGUGug--CUAGC------------UAGCGCGCGC- -5'
12110 5' -56.6 NC_003309.1 + 16149 0.69 0.483231
Target:  5'- gCCGAGCgACACGAUCacccacuUCGCGaUGCc -3'
miRNA:   3'- aGGCUCG-UGUGCUAGcu-----AGCGC-GCGc -5'
12110 5' -56.6 NC_003309.1 + 9535 0.69 0.483231
Target:  5'- aUCGAacuGCGCGCcgcGUCGAgCGCGCGCa -3'
miRNA:   3'- aGGCU---CGUGUGc--UAGCUaGCGCGCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.