miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12130 3' -54.5 NC_003309.1 + 18416 0.66 0.778194
Target:  5'- ---gACGAGCGCgACCGuGUagcgcgucuuGCGCUCGc -3'
miRNA:   3'- acuaUGCUUGCG-UGGC-CG----------UGCGAGCu -5'
12130 3' -54.5 NC_003309.1 + 3318 0.66 0.778194
Target:  5'- cGAUGuCGAGCGCGgaaaGGCgcaGCGCgUCGAu -3'
miRNA:   3'- aCUAU-GCUUGCGUgg--CCG---UGCG-AGCU- -5'
12130 3' -54.5 NC_003309.1 + 32603 0.66 0.768086
Target:  5'- ---aACGAGCGCGgaCGGCagACGCUgGGc -3'
miRNA:   3'- acuaUGCUUGCGUg-GCCG--UGCGAgCU- -5'
12130 3' -54.5 NC_003309.1 + 35131 0.66 0.768086
Target:  5'- -cGUGCG-AUGCGCUGGacgaACuGCUCGAu -3'
miRNA:   3'- acUAUGCuUGCGUGGCCg---UG-CGAGCU- -5'
12130 3' -54.5 NC_003309.1 + 27648 0.66 0.768086
Target:  5'- -----aGAAgGUcgGCCGGCauACGCUCGAg -3'
miRNA:   3'- acuaugCUUgCG--UGGCCG--UGCGAGCU- -5'
12130 3' -54.5 NC_003309.1 + 41376 0.66 0.768086
Target:  5'- aGcgGCGGGCaaGCCgcguGGUugGCUCGAc -3'
miRNA:   3'- aCuaUGCUUGcgUGG----CCGugCGAGCU- -5'
12130 3' -54.5 NC_003309.1 + 45265 0.66 0.757838
Target:  5'- uUGGU-CGAAUGCcggccGCCGcGUGCGcCUCGAa -3'
miRNA:   3'- -ACUAuGCUUGCG-----UGGC-CGUGC-GAGCU- -5'
12130 3' -54.5 NC_003309.1 + 16843 0.66 0.74746
Target:  5'- -aAUGCGAaucucgucGCGCcccACCGG-AUGCUCGAg -3'
miRNA:   3'- acUAUGCU--------UGCG---UGGCCgUGCGAGCU- -5'
12130 3' -54.5 NC_003309.1 + 40091 0.66 0.726361
Target:  5'- -aAUGCGGcACGCGgcCCGGUugaaGCUCGAa -3'
miRNA:   3'- acUAUGCU-UGCGU--GGCCGug--CGAGCU- -5'
12130 3' -54.5 NC_003309.1 + 10331 0.66 0.726361
Target:  5'- ---gACGAGCGCucGCCGG-GCGC-CGAc -3'
miRNA:   3'- acuaUGCUUGCG--UGGCCgUGCGaGCU- -5'
12130 3' -54.5 NC_003309.1 + 27941 0.67 0.715664
Target:  5'- aGAUGCGu-CGCgGCgGGCACGCgcaaUUGAu -3'
miRNA:   3'- aCUAUGCuuGCG-UGgCCGUGCG----AGCU- -5'
12130 3' -54.5 NC_003309.1 + 44779 0.67 0.704884
Target:  5'- gGAUAcCGAGCGCGCgaggcaaauaguCGaGCGCGUauUCGAg -3'
miRNA:   3'- aCUAU-GCUUGCGUG------------GC-CGUGCG--AGCU- -5'
12130 3' -54.5 NC_003309.1 + 17694 0.67 0.703801
Target:  5'- cGu--CGAACGCACCGGCcagcaccuGCGUauacgacccgccgUCGAc -3'
miRNA:   3'- aCuauGCUUGCGUGGCCG--------UGCG-------------AGCU- -5'
12130 3' -54.5 NC_003309.1 + 43585 0.67 0.694032
Target:  5'- aGGUACGAGCGCAggccCCaGUACgGCggCGAc -3'
miRNA:   3'- aCUAUGCUUGCGU----GGcCGUG-CGa-GCU- -5'
12130 3' -54.5 NC_003309.1 + 11782 0.67 0.68312
Target:  5'- cGA-GCGAcuuguACGCGUCGGCGCGCcCGGc -3'
miRNA:   3'- aCUaUGCU-----UGCGUGGCCGUGCGaGCU- -5'
12130 3' -54.5 NC_003309.1 + 7227 0.67 0.672158
Target:  5'- aGAUacccGCGuuuGCGCGCCGGCAguacCGCcgUGAu -3'
miRNA:   3'- aCUA----UGCu--UGCGUGGCCGU----GCGa-GCU- -5'
12130 3' -54.5 NC_003309.1 + 17120 0.67 0.67106
Target:  5'- cGAUAaCGAGCgGCACCGGUucgcccuGCGC-CGc -3'
miRNA:   3'- aCUAU-GCUUG-CGUGGCCG-------UGCGaGCu -5'
12130 3' -54.5 NC_003309.1 + 27186 0.67 0.67106
Target:  5'- uUGAUuCGcGCGUguuguagACCGGCGCGC-CGGc -3'
miRNA:   3'- -ACUAuGCuUGCG-------UGGCCGUGCGaGCU- -5'
12130 3' -54.5 NC_003309.1 + 52972 0.67 0.668862
Target:  5'- cGcgACGAGCGCACCGcacccccggugcuuGCACGgcuucaUCGGg -3'
miRNA:   3'- aCuaUGCUUGCGUGGC--------------CGUGCg-----AGCU- -5'
12130 3' -54.5 NC_003309.1 + 33080 0.68 0.661159
Target:  5'- ---gAUGGGCGCAUCcuucGCGCGUUCGAu -3'
miRNA:   3'- acuaUGCUUGCGUGGc---CGUGCGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.