miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12130 5' -54.9 NC_003309.1 + 44455 0.68 0.65907
Target:  5'- -aUCGAacacgACGUCGcccggccgacUGCCGGCGAGCacGCa -3'
miRNA:   3'- gcAGCU-----UGCAGU----------ACGGCUGCUCG--CGg -5'
12130 5' -54.9 NC_003309.1 + 1748 0.68 0.64821
Target:  5'- cCGUCG-AUGUCGUGCCaGAaaAGCcggGCCa -3'
miRNA:   3'- -GCAGCuUGCAGUACGG-CUgcUCG---CGG- -5'
12130 5' -54.9 NC_003309.1 + 48235 0.68 0.64821
Target:  5'- -cUCGcuCGaUCGaGCCGucCGAGCGCCg -3'
miRNA:   3'- gcAGCuuGC-AGUaCGGCu-GCUCGCGG- -5'
12130 5' -54.9 NC_003309.1 + 31750 0.68 0.64821
Target:  5'- -cUCGGcaGCaUCAUGCgCGAUGAGCGUg -3'
miRNA:   3'- gcAGCU--UGcAGUACG-GCUGCUCGCGg -5'
12130 5' -54.9 NC_003309.1 + 16411 0.68 0.637336
Target:  5'- aCGUC--ACGUCGcgGCCGACGucgagaaaaccGGCGUCc -3'
miRNA:   3'- -GCAGcuUGCAGUa-CGGCUGC-----------UCGCGG- -5'
12130 5' -54.9 NC_003309.1 + 10742 0.69 0.604723
Target:  5'- gCGcCGucCGUCGcUGCUGcGCGAGCGCg -3'
miRNA:   3'- -GCaGCuuGCAGU-ACGGC-UGCUCGCGg -5'
12130 5' -54.9 NC_003309.1 + 31994 0.69 0.593886
Target:  5'- gCGUCGcACGUCA-GCCGcaaACuGGCGCa -3'
miRNA:   3'- -GCAGCuUGCAGUaCGGC---UGcUCGCGg -5'
12130 5' -54.9 NC_003309.1 + 999 0.69 0.593886
Target:  5'- uCGUCGAggACGaaCAUGCCGAUGccgaCGCCc -3'
miRNA:   3'- -GCAGCU--UGCa-GUACGGCUGCuc--GCGG- -5'
12130 5' -54.9 NC_003309.1 + 15245 0.69 0.576616
Target:  5'- aCGaUCG-ACGUCGacugaagaUGCCGAUGAaagcgcagcacgucgGCGCCg -3'
miRNA:   3'- -GC-AGCuUGCAGU--------ACGGCUGCU---------------CGCGG- -5'
12130 5' -54.9 NC_003309.1 + 3250 0.69 0.561597
Target:  5'- --cUGAACGUCAUGCCcuccugcAgGAGCGCa -3'
miRNA:   3'- gcaGCUUGCAGUACGGc------UgCUCGCGg -5'
12130 5' -54.9 NC_003309.1 + 46757 0.7 0.550935
Target:  5'- --aCGGGCGUCAcuucGCCaGCGcGCGCCg -3'
miRNA:   3'- gcaGCUUGCAGUa---CGGcUGCuCGCGG- -5'
12130 5' -54.9 NC_003309.1 + 16773 0.7 0.529806
Target:  5'- aCGgCGAACGUgAggccGCCGuCGcGCGCCg -3'
miRNA:   3'- -GCaGCUUGCAgUa---CGGCuGCuCGCGG- -5'
12130 5' -54.9 NC_003309.1 + 25555 0.7 0.518311
Target:  5'- gGUCGggUGUagcggGCCGAagacgcaCGGGCGUCg -3'
miRNA:   3'- gCAGCuuGCAgua--CGGCU-------GCUCGCGG- -5'
12130 5' -54.9 NC_003309.1 + 18731 0.71 0.498697
Target:  5'- uGUCGAGCGUgAUcgucucGCCGGCugcGGCGCg -3'
miRNA:   3'- gCAGCUUGCAgUA------CGGCUGc--UCGCGg -5'
12130 5' -54.9 NC_003309.1 + 7814 0.71 0.478417
Target:  5'- cCGgCGAGCGcCAUGUCGA-GcGCGCCa -3'
miRNA:   3'- -GCaGCUUGCaGUACGGCUgCuCGCGG- -5'
12130 5' -54.9 NC_003309.1 + 9715 0.71 0.468429
Target:  5'- gCGUCGAGCGgu-UGCCGugugucgcgcGCGAuGCGCa -3'
miRNA:   3'- -GCAGCUUGCaguACGGC----------UGCU-CGCGg -5'
12130 5' -54.9 NC_003309.1 + 8973 0.71 0.45855
Target:  5'- -aUCGAGCu---UGCCGAacuCGAGCGCCu -3'
miRNA:   3'- gcAGCUUGcaguACGGCU---GCUCGCGG- -5'
12130 5' -54.9 NC_003309.1 + 22737 0.71 0.45855
Target:  5'- uGUCGAucucGCGcugaUCGUcGCCGGCGA-CGCCg -3'
miRNA:   3'- gCAGCU----UGC----AGUA-CGGCUGCUcGCGG- -5'
12130 5' -54.9 NC_003309.1 + 5412 0.72 0.438174
Target:  5'- uCGUCGGGauaucggUGUCAgcaccgauguaGCCGACGAucGCGCCa -3'
miRNA:   3'- -GCAGCUU-------GCAGUa----------CGGCUGCU--CGCGG- -5'
12130 5' -54.9 NC_003309.1 + 10973 0.73 0.357982
Target:  5'- --cCGAGCGcaucaUCGUGCCcguacgcGCGAGCGCCg -3'
miRNA:   3'- gcaGCUUGC-----AGUACGGc------UGCUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.