miRNA display CGI


Results 21 - 26 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12140 5' -55.7 NC_003309.1 + 2843 0.73 0.301169
Target:  5'- aUCGAUGaAGCUGUAGCUGUUGcCACGAa -3'
miRNA:   3'- -AGCUGCgUCGACGUCGGUAGU-GUGCU- -5'
12140 5' -55.7 NC_003309.1 + 16124 0.76 0.178138
Target:  5'- gCGAUGCcGCUGCGcucGCaCAUCGCGCGAu -3'
miRNA:   3'- aGCUGCGuCGACGU---CG-GUAGUGUGCU- -5'
12140 5' -55.7 NC_003309.1 + 3952 0.76 0.173339
Target:  5'- gUCGGCGCuccgauGCgGCAGCCAUCuGCGCGc -3'
miRNA:   3'- -AGCUGCGu-----CGaCGUCGGUAG-UGUGCu -5'
12140 5' -55.7 NC_003309.1 + 22473 0.76 0.173339
Target:  5'- cCGACGCGGCggcaucgugcGCGGCgAUCGCACGc -3'
miRNA:   3'- aGCUGCGUCGa---------CGUCGgUAGUGUGCu -5'
12140 5' -55.7 NC_003309.1 + 45318 0.77 0.164088
Target:  5'- gUUGAUGCauGGCaUGCAGCCAaCGCGCGAc -3'
miRNA:   3'- -AGCUGCG--UCG-ACGUCGGUaGUGUGCU- -5'
12140 5' -55.7 NC_003309.1 + 24007 1.1 0.000723
Target:  5'- gUCGACGCAGCUGCAGCCAUCACACGAg -3'
miRNA:   3'- -AGCUGCGUCGACGUCGGUAGUGUGCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.