miRNA display CGI


Results 21 - 26 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12140 5' -55.7 NC_003309.1 + 19450 0.67 0.587139
Target:  5'- gCGuguCGCGGC-GgAGCCGUCACcCGGg -3'
miRNA:   3'- aGCu--GCGUCGaCgUCGGUAGUGuGCU- -5'
12140 5' -55.7 NC_003309.1 + 13493 0.67 0.598158
Target:  5'- gCGGCccGCuGGgUGUAGCCGUCGC-CGAa -3'
miRNA:   3'- aGCUG--CG-UCgACGUCGGUAGUGuGCU- -5'
12140 5' -55.7 NC_003309.1 + 22326 0.67 0.620276
Target:  5'- cUCGACGCaAGCgccgGCcGCCAUgccaagcaGCGCGGc -3'
miRNA:   3'- -AGCUGCG-UCGa---CGuCGGUAg-------UGUGCU- -5'
12140 5' -55.7 NC_003309.1 + 20736 0.67 0.620276
Target:  5'- cCGuCGCGGCUGaaccaCCAUCGCACc- -3'
miRNA:   3'- aGCuGCGUCGACguc--GGUAGUGUGcu -5'
12140 5' -55.7 NC_003309.1 + 20117 0.66 0.653506
Target:  5'- aUCGACGCcauGUauuUGUGGCCGUCG-ACGGu -3'
miRNA:   3'- -AGCUGCGu--CG---ACGUCGGUAGUgUGCU- -5'
12140 5' -55.7 NC_003309.1 + 15154 0.66 0.653506
Target:  5'- cCGGCucCAGCUGCuggaugucuGCCGUUACACu- -3'
miRNA:   3'- aGCUGc-GUCGACGu--------CGGUAGUGUGcu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.