miRNA display CGI


Results 21 - 40 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12157 5' -52.5 NC_003309.1 + 6751 0.69 0.729946
Target:  5'- aCgGCGcgCGCAUACGGC---CAACGu -3'
miRNA:   3'- -GgCGCuaGCGUGUGCCGuauGUUGCc -5'
12157 5' -52.5 NC_003309.1 + 19936 0.69 0.738397
Target:  5'- gCGCGAUCGCuuccguuugcacCGCGGCGcuCAGCaGGu -3'
miRNA:   3'- gGCGCUAGCGu-----------GUGCCGUauGUUG-CC- -5'
12157 5' -52.5 NC_003309.1 + 19784 0.69 0.740499
Target:  5'- cCCGCGuaaaucGUCGCGuCGcCGGCcauCGGCGGg -3'
miRNA:   3'- -GGCGC------UAGCGU-GU-GCCGuauGUUGCC- -5'
12157 5' -52.5 NC_003309.1 + 17756 0.69 0.750942
Target:  5'- gCCGUuuuUCGCGCGCGGCAgcuCGAUc- -3'
miRNA:   3'- -GGCGcu-AGCGUGUGCCGUau-GUUGcc -5'
12157 5' -52.5 NC_003309.1 + 18725 0.68 0.761264
Target:  5'- gCGUGAUCGUcucGC-CGGC-UGCGgcGCGGa -3'
miRNA:   3'- gGCGCUAGCG---UGuGCCGuAUGU--UGCC- -5'
12157 5' -52.5 NC_003309.1 + 19835 0.68 0.781496
Target:  5'- uCgGCGAUCGCcgacuGCAacgaccagacgcCGGCAUugAGCGu -3'
miRNA:   3'- -GgCGCUAGCG-----UGU------------GCCGUAugUUGCc -5'
12157 5' -52.5 NC_003309.1 + 51567 0.68 0.781496
Target:  5'- aCCGCGAUUGC-CuCGGCAacucgaaGCAuCGGc -3'
miRNA:   3'- -GGCGCUAGCGuGuGCCGUa------UGUuGCC- -5'
12157 5' -52.5 NC_003309.1 + 5584 0.68 0.804946
Target:  5'- gUCGCGAaugaacgccuugucuUCGCGCGCGcCGaucGCGGCGGu -3'
miRNA:   3'- -GGCGCU---------------AGCGUGUGCcGUa--UGUUGCC- -5'
12157 5' -52.5 NC_003309.1 + 31001 0.68 0.81065
Target:  5'- cUCGCcaGAUCGCGaGCGGC-UACAACc- -3'
miRNA:   3'- -GGCG--CUAGCGUgUGCCGuAUGUUGcc -5'
12157 5' -52.5 NC_003309.1 + 37310 0.67 0.817219
Target:  5'- gCGCGAUCGUGCGCGacgcccugaaucucGCcgGCGcgucgaugGCGGu -3'
miRNA:   3'- gGCGCUAGCGUGUGC--------------CGuaUGU--------UGCC- -5'
12157 5' -52.5 NC_003309.1 + 16689 0.67 0.829163
Target:  5'- uUCGCGGUCGaugaaACGGCGagACGAUGa -3'
miRNA:   3'- -GGCGCUAGCgug--UGCCGUa-UGUUGCc -5'
12157 5' -52.5 NC_003309.1 + 39245 0.67 0.836339
Target:  5'- cCCGCGGaucagcaUCGCGCACgaaGGUcgACGaagugcucgccgaACGGg -3'
miRNA:   3'- -GGCGCU-------AGCGUGUG---CCGuaUGU-------------UGCC- -5'
12157 5' -52.5 NC_003309.1 + 32930 0.67 0.838111
Target:  5'- aUCGCGGcaaGCAacaACGGCuAUGCGGcCGGa -3'
miRNA:   3'- -GGCGCUag-CGUg--UGCCG-UAUGUU-GCC- -5'
12157 5' -52.5 NC_003309.1 + 30902 0.67 0.838111
Target:  5'- uCUGCGAaagGCu--CGGCGUACAACGu -3'
miRNA:   3'- -GGCGCUag-CGuguGCCGUAUGUUGCc -5'
12157 5' -52.5 NC_003309.1 + 28812 0.67 0.84163
Target:  5'- cCCGCGGgauagagcugcaacaUCGCGCgaGCGGCuu-CAGCa- -3'
miRNA:   3'- -GGCGCU---------------AGCGUG--UGCCGuauGUUGcc -5'
12157 5' -52.5 NC_003309.1 + 7222 0.67 0.846842
Target:  5'- cCCGCGuUUGCGCGCcGGCAgUACcGCc- -3'
miRNA:   3'- -GGCGCuAGCGUGUG-CCGU-AUGuUGcc -5'
12157 5' -52.5 NC_003309.1 + 21773 0.67 0.846842
Target:  5'- aUCGUGAugcUCcaguuCACGCaGGCGUGCAGCGa -3'
miRNA:   3'- -GGCGCU---AGc----GUGUG-CCGUAUGUUGCc -5'
12157 5' -52.5 NC_003309.1 + 24337 0.67 0.85282
Target:  5'- aCGCGAccuuucauguauucUCGCGCACcGUAcACGGCGa -3'
miRNA:   3'- gGCGCU--------------AGCGUGUGcCGUaUGUUGCc -5'
12157 5' -52.5 NC_003309.1 + 13635 0.67 0.855347
Target:  5'- uCCGCGggCGCGaagcgGCGGCGUccaguagaACGACu- -3'
miRNA:   3'- -GGCGCuaGCGUg----UGCCGUA--------UGUUGcc -5'
12157 5' -52.5 NC_003309.1 + 18478 0.67 0.855347
Target:  5'- cCCGUcGUCGUccuGCACGGCuucgACAGCc- -3'
miRNA:   3'- -GGCGcUAGCG---UGUGCCGua--UGUUGcc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.