miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12158 5' -56.4 NC_003309.1 + 10490 0.69 0.479922
Target:  5'- uCGCGA--GGCUuucgCGCAUCGCGCGc -3'
miRNA:   3'- cGCGCUuuUCGAcga-GCGUGGCGCGC- -5'
12158 5' -56.4 NC_003309.1 + 10586 0.68 0.500377
Target:  5'- uCGCGAcauGC-GCUUGCGCCGcCGCc -3'
miRNA:   3'- cGCGCUuuuCGaCGAGCGUGGC-GCGc -5'
12158 5' -56.4 NC_003309.1 + 21946 0.68 0.510748
Target:  5'- aCGCGuGAAGC-GCUgGC-CCGCGUa -3'
miRNA:   3'- cGCGCuUUUCGaCGAgCGuGGCGCGc -5'
12158 5' -56.4 NC_003309.1 + 22420 0.68 0.518061
Target:  5'- cGCGCGAGAucuuGCccaacgcuucggcaUGC-CGCugCGCGuCGa -3'
miRNA:   3'- -CGCGCUUUu---CG--------------ACGaGCGugGCGC-GC- -5'
12158 5' -56.4 NC_003309.1 + 32397 0.68 0.521207
Target:  5'- uGCcCGAGcGGCgacgGCUCGCugCG-GCGg -3'
miRNA:   3'- -CGcGCUUuUCGa---CGAGCGugGCgCGC- -5'
12158 5' -56.4 NC_003309.1 + 19296 0.68 0.521207
Target:  5'- aGCGCGuuuucGGCg---CGCACgCGCGCGa -3'
miRNA:   3'- -CGCGCuuu--UCGacgaGCGUG-GCGCGC- -5'
12158 5' -56.4 NC_003309.1 + 35648 0.68 0.531749
Target:  5'- aGCGCGAcgaccAAGGCUgGCUgaCGCAUCcCGCa -3'
miRNA:   3'- -CGCGCU-----UUUCGA-CGA--GCGUGGcGCGc -5'
12158 5' -56.4 NC_003309.1 + 8810 0.68 0.531749
Target:  5'- uGCGCGuc--GUcGCUCGCA-CGCGUGa -3'
miRNA:   3'- -CGCGCuuuuCGaCGAGCGUgGCGCGC- -5'
12158 5' -56.4 NC_003309.1 + 20618 0.67 0.553055
Target:  5'- cGCGCGAGAGaucuGCcGC-CGCGCUGC-CGu -3'
miRNA:   3'- -CGCGCUUUU----CGaCGaGCGUGGCGcGC- -5'
12158 5' -56.4 NC_003309.1 + 6140 0.67 0.563805
Target:  5'- cGCGCGAuu-GCaGCuUCGCuuaCGCGCc -3'
miRNA:   3'- -CGCGCUuuuCGaCG-AGCGug-GCGCGc -5'
12158 5' -56.4 NC_003309.1 + 16732 0.67 0.574609
Target:  5'- cGCGCGGAAgcccggaaucAGCaccgacaGCgcgCGCACCGCcuucGCGg -3'
miRNA:   3'- -CGCGCUUU----------UCGa------CGa--GCGUGGCG----CGC- -5'
12158 5' -56.4 NC_003309.1 + 16944 0.67 0.585459
Target:  5'- uGCGCGAAAccgaacGUcGCgaUCGCGCCGacaGCGa -3'
miRNA:   3'- -CGCGCUUUu-----CGaCG--AGCGUGGCg--CGC- -5'
12158 5' -56.4 NC_003309.1 + 3322 0.67 0.585459
Target:  5'- cGCGCGAugucGAGC-GCggaaaggCGCAgCGCGuCGa -3'
miRNA:   3'- -CGCGCUu---UUCGaCGa------GCGUgGCGC-GC- -5'
12158 5' -56.4 NC_003309.1 + 39620 0.67 0.596349
Target:  5'- cGCGCuGccAAGCaUGCgagCGUGCUGCGCu -3'
miRNA:   3'- -CGCG-CuuUUCG-ACGa--GCGUGGCGCGc -5'
12158 5' -56.4 NC_003309.1 + 18399 0.67 0.596349
Target:  5'- aGCGCGucuuGC-GCUCGCuGCCGaCGUa -3'
miRNA:   3'- -CGCGCuuuuCGaCGAGCG-UGGC-GCGc -5'
12158 5' -56.4 NC_003309.1 + 11508 0.67 0.596349
Target:  5'- cUGCGAcgcGAGGCUcGCcgugucgaUCGCGCCG-GCGg -3'
miRNA:   3'- cGCGCU---UUUCGA-CG--------AGCGUGGCgCGC- -5'
12158 5' -56.4 NC_003309.1 + 17553 0.67 0.59744
Target:  5'- cCGCGGucAGUUGCguauucuggaucuggCGCACCcacgGCGCGu -3'
miRNA:   3'- cGCGCUuuUCGACGa--------------GCGUGG----CGCGC- -5'
12158 5' -56.4 NC_003309.1 + 27141 0.67 0.607269
Target:  5'- cGCGCuGAAGAauguccauGCUuuccGCUCGCACgCGcCGCa -3'
miRNA:   3'- -CGCG-CUUUU--------CGA----CGAGCGUG-GC-GCGc -5'
12158 5' -56.4 NC_003309.1 + 26492 0.66 0.617115
Target:  5'- aCGC-AGAGGCUugGCUCGCgcgaacgGCUGCGCc -3'
miRNA:   3'- cGCGcUUUUCGA--CGAGCG-------UGGCGCGc -5'
12158 5' -56.4 NC_003309.1 + 34172 0.66 0.618209
Target:  5'- cCGuCGAAAcGCUGC--GC-CCGCGCGa -3'
miRNA:   3'- cGC-GCUUUuCGACGagCGuGGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.