miRNA display CGI


Results 1 - 20 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12158 5' -56.4 NC_003309.1 + 35681 1.11 0.000546
Target:  5'- uGCGCGAAAAGCUGCUCGCACCGCGCGa -3'
miRNA:   3'- -CGCGCUUUUCGACGAGCGUGGCGCGC- -5'
12158 5' -56.4 NC_003309.1 + 12651 0.8 0.090028
Target:  5'- aUGCGAGccGCUGCUCGagauaGCCGCGCu -3'
miRNA:   3'- cGCGCUUuuCGACGAGCg----UGGCGCGc -5'
12158 5' -56.4 NC_003309.1 + 46488 0.79 0.112834
Target:  5'- -gGCGGGAA-CUGCUCGCGCauaGCGCGg -3'
miRNA:   3'- cgCGCUUUUcGACGAGCGUGg--CGCGC- -5'
12158 5' -56.4 NC_003309.1 + 31664 0.77 0.140954
Target:  5'- cCGCGAcauuccGAAGCUGCUCGCAgugcccgcUCGCGUGc -3'
miRNA:   3'- cGCGCU------UUUCGACGAGCGU--------GGCGCGC- -5'
12158 5' -56.4 NC_003309.1 + 36315 0.76 0.17536
Target:  5'- aGCaGCaGAugaaGGAGCUGCUCGCACC-CGCa -3'
miRNA:   3'- -CG-CG-CU----UUUCGACGAGCGUGGcGCGc -5'
12158 5' -56.4 NC_003309.1 + 11984 0.75 0.217045
Target:  5'- cGCGCGGc-AGCcGCggcgCGCGCCGCGuCGg -3'
miRNA:   3'- -CGCGCUuuUCGaCGa---GCGUGGCGC-GC- -5'
12158 5' -56.4 NC_003309.1 + 5181 0.74 0.237196
Target:  5'- cGCGCucgaucgccaguuucGAGgcGAGCUGCgCGuCGCCGCGCGc -3'
miRNA:   3'- -CGCG---------------CUU--UUCGACGaGC-GUGGCGCGC- -5'
12158 5' -56.4 NC_003309.1 + 19937 0.74 0.240911
Target:  5'- cGCGCGAuc-GCUuccGUUUGCACCGCgGCGc -3'
miRNA:   3'- -CGCGCUuuuCGA---CGAGCGUGGCG-CGC- -5'
12158 5' -56.4 NC_003309.1 + 16126 0.73 0.260216
Target:  5'- uCGCGAugccGCUgcGCUCGCACauCGCGCGa -3'
miRNA:   3'- cGCGCUuuu-CGA--CGAGCGUG--GCGCGC- -5'
12158 5' -56.4 NC_003309.1 + 21991 0.73 0.260216
Target:  5'- cGCGUGcucgauGAGCcguUGCUCGaGCCGCGCGc -3'
miRNA:   3'- -CGCGCuu----UUCG---ACGAGCgUGGCGCGC- -5'
12158 5' -56.4 NC_003309.1 + 50254 0.73 0.280764
Target:  5'- uCGCG-AAAGCUGaucgUCGCGCgCGCGUGa -3'
miRNA:   3'- cGCGCuUUUCGACg---AGCGUG-GCGCGC- -5'
12158 5' -56.4 NC_003309.1 + 1990 0.72 0.310136
Target:  5'- gGUGCGAcAGGUUcgUUGCGCCGUGCGg -3'
miRNA:   3'- -CGCGCUuUUCGAcgAGCGUGGCGCGC- -5'
12158 5' -56.4 NC_003309.1 + 10879 0.72 0.310136
Target:  5'- cGCGCGuuccGCUcGCUCGCGCgccUGCGUGg -3'
miRNA:   3'- -CGCGCuuuuCGA-CGAGCGUG---GCGCGC- -5'
12158 5' -56.4 NC_003309.1 + 28810 0.72 0.325677
Target:  5'- cGCGgGAuAGAGCUGCaa-CAUCGCGCGa -3'
miRNA:   3'- -CGCgCU-UUUCGACGagcGUGGCGCGC- -5'
12158 5' -56.4 NC_003309.1 + 10719 0.71 0.35847
Target:  5'- aGCGCGAgcGAAGCcucgGCgCGCucgagcuccuGCUGCGCGg -3'
miRNA:   3'- -CGCGCU--UUUCGa---CGaGCG----------UGGCGCGC- -5'
12158 5' -56.4 NC_003309.1 + 11234 0.7 0.430686
Target:  5'- aCGCGGAcuGC-GCgUCGUcuGCCGCGCGc -3'
miRNA:   3'- cGCGCUUuuCGaCG-AGCG--UGGCGCGC- -5'
12158 5' -56.4 NC_003309.1 + 10950 0.7 0.430686
Target:  5'- cGCGCGAGcgccGuCUGCgcCGuCGCCGCGCu -3'
miRNA:   3'- -CGCGCUUuu--C-GACGa-GC-GUGGCGCGc -5'
12158 5' -56.4 NC_003309.1 + 639 0.69 0.440299
Target:  5'- cGCGCGAAcuuGAGCcccUGCUCua--CGCGCGg -3'
miRNA:   3'- -CGCGCUU---UUCG---ACGAGcgugGCGCGC- -5'
12158 5' -56.4 NC_003309.1 + 49871 0.69 0.450033
Target:  5'- cGCGCGAAuGAGCgcgGUUCggaGCACguucuucgCGCGCGg -3'
miRNA:   3'- -CGCGCUU-UUCGa--CGAG---CGUG--------GCGCGC- -5'
12158 5' -56.4 NC_003309.1 + 11076 0.69 0.459884
Target:  5'- uCGCGGAAcAGCaaccaGUUCGCgGCCGCGCc -3'
miRNA:   3'- cGCGCUUU-UCGa----CGAGCG-UGGCGCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.