Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12158 | 5' | -56.4 | NC_003309.1 | + | 9716 | 0.66 | 0.661998 |
Target: 5'- cGCGuCGAGcGGUUGC-CGUGugUCGCGCGc -3' miRNA: 3'- -CGC-GCUUuUCGACGaGCGU--GGCGCGC- -5' |
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12158 | 5' | -56.4 | NC_003309.1 | + | 19975 | 0.66 | 0.661998 |
Target: 5'- uCGUGAucuGCUGCgC-CugCGCGCGa -3' miRNA: 3'- cGCGCUuuuCGACGaGcGugGCGCGC- -5' |
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12158 | 5' | -56.4 | NC_003309.1 | + | 32989 | 0.66 | 0.651067 |
Target: 5'- cCGCaucuucGCaGCcCGCACCGCGCGc -3' miRNA: 3'- cGCGcuuuu-CGaCGaGCGUGGCGCGC- -5' |
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12158 | 5' | -56.4 | NC_003309.1 | + | 19894 | 0.66 | 0.651067 |
Target: 5'- aGCuCGAuc-GCUGCU-GCGCCGCGa- -3' miRNA: 3'- -CGcGCUuuuCGACGAgCGUGGCGCgc -5' |
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12158 | 5' | -56.4 | NC_003309.1 | + | 9522 | 0.66 | 0.640118 |
Target: 5'- cCGCGucGAGC-GCgCGCACCGUGa- -3' miRNA: 3'- cGCGCuuUUCGaCGaGCGUGGCGCgc -5' |
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12158 | 5' | -56.4 | NC_003309.1 | + | 7133 | 0.66 | 0.629163 |
Target: 5'- -aGCGGAugcGCaUGCUCGCgACCGuUGCa -3' miRNA: 3'- cgCGCUUuu-CG-ACGAGCG-UGGC-GCGc -5' |
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12158 | 5' | -56.4 | NC_003309.1 | + | 34172 | 0.66 | 0.618209 |
Target: 5'- cCGuCGAAAcGCUGC--GC-CCGCGCGa -3' miRNA: 3'- cGC-GCUUUuCGACGagCGuGGCGCGC- -5' |
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12158 | 5' | -56.4 | NC_003309.1 | + | 26492 | 0.66 | 0.617115 |
Target: 5'- aCGC-AGAGGCUugGCUCGCgcgaacgGCUGCGCc -3' miRNA: 3'- cGCGcUUUUCGA--CGAGCG-------UGGCGCGc -5' |
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12158 | 5' | -56.4 | NC_003309.1 | + | 27141 | 0.67 | 0.607269 |
Target: 5'- cGCGCuGAAGAauguccauGCUuuccGCUCGCACgCGcCGCa -3' miRNA: 3'- -CGCG-CUUUU--------CGA----CGAGCGUG-GC-GCGc -5' |
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12158 | 5' | -56.4 | NC_003309.1 | + | 17553 | 0.67 | 0.59744 |
Target: 5'- cCGCGGucAGUUGCguauucuggaucuggCGCACCcacgGCGCGu -3' miRNA: 3'- cGCGCUuuUCGACGa--------------GCGUGG----CGCGC- -5' |
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12158 | 5' | -56.4 | NC_003309.1 | + | 11508 | 0.67 | 0.596349 |
Target: 5'- cUGCGAcgcGAGGCUcGCcgugucgaUCGCGCCG-GCGg -3' miRNA: 3'- cGCGCU---UUUCGA-CG--------AGCGUGGCgCGC- -5' |
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12158 | 5' | -56.4 | NC_003309.1 | + | 39620 | 0.67 | 0.596349 |
Target: 5'- cGCGCuGccAAGCaUGCgagCGUGCUGCGCu -3' miRNA: 3'- -CGCG-CuuUUCG-ACGa--GCGUGGCGCGc -5' |
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12158 | 5' | -56.4 | NC_003309.1 | + | 18399 | 0.67 | 0.596349 |
Target: 5'- aGCGCGucuuGC-GCUCGCuGCCGaCGUa -3' miRNA: 3'- -CGCGCuuuuCGaCGAGCG-UGGC-GCGc -5' |
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12158 | 5' | -56.4 | NC_003309.1 | + | 16944 | 0.67 | 0.585459 |
Target: 5'- uGCGCGAAAccgaacGUcGCgaUCGCGCCGacaGCGa -3' miRNA: 3'- -CGCGCUUUu-----CGaCG--AGCGUGGCg--CGC- -5' |
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12158 | 5' | -56.4 | NC_003309.1 | + | 3322 | 0.67 | 0.585459 |
Target: 5'- cGCGCGAugucGAGC-GCggaaaggCGCAgCGCGuCGa -3' miRNA: 3'- -CGCGCUu---UUCGaCGa------GCGUgGCGC-GC- -5' |
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12158 | 5' | -56.4 | NC_003309.1 | + | 16732 | 0.67 | 0.574609 |
Target: 5'- cGCGCGGAAgcccggaaucAGCaccgacaGCgcgCGCACCGCcuucGCGg -3' miRNA: 3'- -CGCGCUUU----------UCGa------CGa--GCGUGGCG----CGC- -5' |
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12158 | 5' | -56.4 | NC_003309.1 | + | 6140 | 0.67 | 0.563805 |
Target: 5'- cGCGCGAuu-GCaGCuUCGCuuaCGCGCc -3' miRNA: 3'- -CGCGCUuuuCGaCG-AGCGug-GCGCGc -5' |
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12158 | 5' | -56.4 | NC_003309.1 | + | 20618 | 0.67 | 0.553055 |
Target: 5'- cGCGCGAGAGaucuGCcGC-CGCGCUGC-CGu -3' miRNA: 3'- -CGCGCUUUU----CGaCGaGCGUGGCGcGC- -5' |
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12158 | 5' | -56.4 | NC_003309.1 | + | 35648 | 0.68 | 0.531749 |
Target: 5'- aGCGCGAcgaccAAGGCUgGCUgaCGCAUCcCGCa -3' miRNA: 3'- -CGCGCU-----UUUCGA-CGA--GCGUGGcGCGc -5' |
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12158 | 5' | -56.4 | NC_003309.1 | + | 8810 | 0.68 | 0.531749 |
Target: 5'- uGCGCGuc--GUcGCUCGCA-CGCGUGa -3' miRNA: 3'- -CGCGCuuuuCGaCGAGCGUgGCGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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