miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12158 5' -56.4 NC_003309.1 + 32397 0.68 0.521207
Target:  5'- uGCcCGAGcGGCgacgGCUCGCugCG-GCGg -3'
miRNA:   3'- -CGcGCUUuUCGa---CGAGCGugGCgCGC- -5'
12158 5' -56.4 NC_003309.1 + 19296 0.68 0.521207
Target:  5'- aGCGCGuuuucGGCg---CGCACgCGCGCGa -3'
miRNA:   3'- -CGCGCuuu--UCGacgaGCGUG-GCGCGC- -5'
12158 5' -56.4 NC_003309.1 + 22420 0.68 0.518061
Target:  5'- cGCGCGAGAucuuGCccaacgcuucggcaUGC-CGCugCGCGuCGa -3'
miRNA:   3'- -CGCGCUUUu---CG--------------ACGaGCGugGCGC-GC- -5'
12158 5' -56.4 NC_003309.1 + 21946 0.68 0.510748
Target:  5'- aCGCGuGAAGC-GCUgGC-CCGCGUa -3'
miRNA:   3'- cGCGCuUUUCGaCGAgCGuGGCGCGc -5'
12158 5' -56.4 NC_003309.1 + 10586 0.68 0.500377
Target:  5'- uCGCGAcauGC-GCUUGCGCCGcCGCc -3'
miRNA:   3'- cGCGCUuuuCGaCGAGCGUGGC-GCGc -5'
12158 5' -56.4 NC_003309.1 + 10490 0.69 0.479922
Target:  5'- uCGCGA--GGCUuucgCGCAUCGCGCGc -3'
miRNA:   3'- cGCGCUuuUCGAcga-GCGUGGCGCGC- -5'
12158 5' -56.4 NC_003309.1 + 11076 0.69 0.459884
Target:  5'- uCGCGGAAcAGCaaccaGUUCGCgGCCGCGCc -3'
miRNA:   3'- cGCGCUUU-UCGa----CGAGCG-UGGCGCGc -5'
12158 5' -56.4 NC_003309.1 + 49871 0.69 0.450033
Target:  5'- cGCGCGAAuGAGCgcgGUUCggaGCACguucuucgCGCGCGg -3'
miRNA:   3'- -CGCGCUU-UUCGa--CGAG---CGUG--------GCGCGC- -5'
12158 5' -56.4 NC_003309.1 + 639 0.69 0.440299
Target:  5'- cGCGCGAAcuuGAGCcccUGCUCua--CGCGCGg -3'
miRNA:   3'- -CGCGCUU---UUCG---ACGAGcgugGCGCGC- -5'
12158 5' -56.4 NC_003309.1 + 10950 0.7 0.430686
Target:  5'- cGCGCGAGcgccGuCUGCgcCGuCGCCGCGCu -3'
miRNA:   3'- -CGCGCUUuu--C-GACGa-GC-GUGGCGCGc -5'
12158 5' -56.4 NC_003309.1 + 11234 0.7 0.430686
Target:  5'- aCGCGGAcuGC-GCgUCGUcuGCCGCGCGc -3'
miRNA:   3'- cGCGCUUuuCGaCG-AGCG--UGGCGCGC- -5'
12158 5' -56.4 NC_003309.1 + 10719 0.71 0.35847
Target:  5'- aGCGCGAgcGAAGCcucgGCgCGCucgagcuccuGCUGCGCGg -3'
miRNA:   3'- -CGCGCU--UUUCGa---CGaGCG----------UGGCGCGC- -5'
12158 5' -56.4 NC_003309.1 + 28810 0.72 0.325677
Target:  5'- cGCGgGAuAGAGCUGCaa-CAUCGCGCGa -3'
miRNA:   3'- -CGCgCU-UUUCGACGagcGUGGCGCGC- -5'
12158 5' -56.4 NC_003309.1 + 10879 0.72 0.310136
Target:  5'- cGCGCGuuccGCUcGCUCGCGCgccUGCGUGg -3'
miRNA:   3'- -CGCGCuuuuCGA-CGAGCGUG---GCGCGC- -5'
12158 5' -56.4 NC_003309.1 + 1990 0.72 0.310136
Target:  5'- gGUGCGAcAGGUUcgUUGCGCCGUGCGg -3'
miRNA:   3'- -CGCGCUuUUCGAcgAGCGUGGCGCGC- -5'
12158 5' -56.4 NC_003309.1 + 50254 0.73 0.280764
Target:  5'- uCGCG-AAAGCUGaucgUCGCGCgCGCGUGa -3'
miRNA:   3'- cGCGCuUUUCGACg---AGCGUG-GCGCGC- -5'
12158 5' -56.4 NC_003309.1 + 21991 0.73 0.260216
Target:  5'- cGCGUGcucgauGAGCcguUGCUCGaGCCGCGCGc -3'
miRNA:   3'- -CGCGCuu----UUCG---ACGAGCgUGGCGCGC- -5'
12158 5' -56.4 NC_003309.1 + 16126 0.73 0.260216
Target:  5'- uCGCGAugccGCUgcGCUCGCACauCGCGCGa -3'
miRNA:   3'- cGCGCUuuu-CGA--CGAGCGUG--GCGCGC- -5'
12158 5' -56.4 NC_003309.1 + 19937 0.74 0.240911
Target:  5'- cGCGCGAuc-GCUuccGUUUGCACCGCgGCGc -3'
miRNA:   3'- -CGCGCUuuuCGA---CGAGCGUGGCG-CGC- -5'
12158 5' -56.4 NC_003309.1 + 5181 0.74 0.237196
Target:  5'- cGCGCucgaucgccaguuucGAGgcGAGCUGCgCGuCGCCGCGCGc -3'
miRNA:   3'- -CGCG---------------CUU--UUCGACGaGC-GUGGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.