Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12216 | 5' | -50.7 | NC_003309.1 | + | 37541 | 0.7 | 0.727371 |
Target: 5'- gGGCGCuacuucaaCGGGcCCAACGUCGACAuguUCa -3' miRNA: 3'- -CCGCGc-------GCUU-GGUUGUAGCUGUu--AGa -5' |
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12216 | 5' | -50.7 | NC_003309.1 | + | 3301 | 0.68 | 0.829415 |
Target: 5'- aGGCGCaGCGcgucGAUCAgcgcuGCAUCGACGuUCg -3' miRNA: 3'- -CCGCG-CGC----UUGGU-----UGUAGCUGUuAGa -5' |
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12216 | 5' | -50.7 | NC_003309.1 | + | 47004 | 0.71 | 0.716407 |
Target: 5'- uGGCGCGUcuucGcAGCCAACuuGUCGACGcUCg -3' miRNA: 3'- -CCGCGCG----C-UUGGUUG--UAGCUGUuAGa -5' |
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12216 | 5' | -50.7 | NC_003309.1 | + | 27334 | 0.71 | 0.716407 |
Target: 5'- cGGCGCgGCGAacuGCCGauGCAUCaGACugGAUCg -3' miRNA: 3'- -CCGCG-CGCU---UGGU--UGUAG-CUG--UUAGa -5' |
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12216 | 5' | -50.7 | NC_003309.1 | + | 16204 | 0.71 | 0.660513 |
Target: 5'- cGGCcgGCGCGAacucgcACCAGuCGUCGACGccgAUCg -3' miRNA: 3'- -CCG--CGCGCU------UGGUU-GUAGCUGU---UAGa -5' |
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12216 | 5' | -50.7 | NC_003309.1 | + | 9693 | 0.75 | 0.48311 |
Target: 5'- cGCGCGCGAugCGcagcACGUCGuucugcGCAAUCg -3' miRNA: 3'- cCGCGCGCUugGU----UGUAGC------UGUUAGa -5' |
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12216 | 5' | -50.7 | NC_003309.1 | + | 22423 | 0.75 | 0.471619 |
Target: 5'- cGGCGCGCGAGaucuugcCCAACGcuUCGGCAu--- -3' miRNA: 3'- -CCGCGCGCUU-------GGUUGU--AGCUGUuaga -5' |
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12216 | 5' | -50.7 | NC_003309.1 | + | 35861 | 0.76 | 0.422217 |
Target: 5'- cGCGCGCGAA-CGGCAUCGugAAcCUg -3' miRNA: 3'- cCGCGCGCUUgGUUGUAGCugUUaGA- -5' |
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12216 | 5' | -50.7 | NC_003309.1 | + | 16948 | 0.76 | 0.402966 |
Target: 5'- cGGCuGCGCGaAACCgAACGUCG-CGAUCg -3' miRNA: 3'- -CCG-CGCGC-UUGG-UUGUAGCuGUUAGa -5' |
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12216 | 5' | -50.7 | NC_003309.1 | + | 4686 | 0.73 | 0.555678 |
Target: 5'- cGGcCGCGCGAGCCGaaacgcuacggcgcGCAuucgcgccUUGACGAUCg -3' miRNA: 3'- -CC-GCGCGCUUGGU--------------UGU--------AGCUGUUAGa -5' |
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12216 | 5' | -50.7 | NC_003309.1 | + | 6750 | 0.71 | 0.716407 |
Target: 5'- cGGCGCGCGcauacGGCCAACGUgcuUGACcggCUg -3' miRNA: 3'- -CCGCGCGC-----UUGGUUGUA---GCUGuuaGA- -5' |
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12216 | 5' | -50.7 | NC_003309.1 | + | 22085 | 0.7 | 0.748982 |
Target: 5'- aGGCGCGCGGcCCGAUGUUguaGGCGAa-- -3' miRNA: 3'- -CCGCGCGCUuGGUUGUAG---CUGUUaga -5' |
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12216 | 5' | -50.7 | NC_003309.1 | + | 11986 | 0.7 | 0.748982 |
Target: 5'- cGCGCGCGGcaGCCGcggcgcgcgccGCGUCGGCGu--- -3' miRNA: 3'- cCGCGCGCU--UGGU-----------UGUAGCUGUuaga -5' |
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12216 | 5' | -50.7 | NC_003309.1 | + | 19958 | 0.69 | 0.780425 |
Target: 5'- uGCGCGCGAuCCG-CuUCGACGcgCg -3' miRNA: 3'- cCGCGCGCUuGGUuGuAGCUGUuaGa -5' |
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12216 | 5' | -50.7 | NC_003309.1 | + | 37303 | 0.69 | 0.799601 |
Target: 5'- cGUGCGCGAcgcccugaaucucGCCGgcGCGUCGaugGCGGUCg -3' miRNA: 3'- cCGCGCGCU-------------UGGU--UGUAGC---UGUUAGa -5' |
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12216 | 5' | -50.7 | NC_003309.1 | + | 5562 | 0.69 | 0.800593 |
Target: 5'- -uCGCGCGcGCCGAUcgCGGCGGUg- -3' miRNA: 3'- ccGCGCGCuUGGUUGuaGCUGUUAga -5' |
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12216 | 5' | -50.7 | NC_003309.1 | + | 47965 | 0.69 | 0.810402 |
Target: 5'- cGGCGCGCcAGCUcGCGcUCGGCGAa-- -3' miRNA: 3'- -CCGCGCGcUUGGuUGU-AGCUGUUaga -5' |
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12216 | 5' | -50.7 | NC_003309.1 | + | 39247 | 0.69 | 0.810402 |
Target: 5'- aGCcCGCGGAUCAGCAUCGcGCAcgaagGUCg -3' miRNA: 3'- cCGcGCGCUUGGUUGUAGC-UGU-----UAGa -5' |
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12216 | 5' | -50.7 | NC_003309.1 | + | 12465 | 0.69 | 0.810402 |
Target: 5'- cGCGCGCGuuUCAccCAUCGACA-UCg -3' miRNA: 3'- cCGCGCGCuuGGUu-GUAGCUGUuAGa -5' |
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12216 | 5' | -50.7 | NC_003309.1 | + | 21751 | 0.69 | 0.820013 |
Target: 5'- aGGCGUgcaGCGAGCuCGAUcugcucUCGACGAUCc -3' miRNA: 3'- -CCGCG---CGCUUG-GUUGu-----AGCUGUUAGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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