miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12324 3' -58.4 NC_003324.1 + 14608 0.75 0.160621
Target:  5'- aGGCGGUAGCGUggCGGCCggagcuACGGCCCu -3'
miRNA:   3'- -UCGCUAUUGCG--GUCGGac----UGCCGGGu -5'
12324 3' -58.4 NC_003324.1 + 35030 0.66 0.545056
Target:  5'- cAGCGGcGGCGgCAGCa--GCGGCCUg -3'
miRNA:   3'- -UCGCUaUUGCgGUCGgacUGCCGGGu -5'
12324 3' -58.4 NC_003324.1 + 25794 0.66 0.510594
Target:  5'- uGGCGGUAcCGUCAuagucgagacgcacGCCUG-CGcGCCCGg -3'
miRNA:   3'- -UCGCUAUuGCGGU--------------CGGACuGC-CGGGU- -5'
12324 3' -58.4 NC_003324.1 + 11619 0.66 0.503398
Target:  5'- cAGCGAUGaacguGCGCUugaacgacggcGGUCUGACGccgaucaacaaGCCCAu -3'
miRNA:   3'- -UCGCUAU-----UGCGG-----------UCGGACUGC-----------CGGGU- -5'
12324 3' -58.4 NC_003324.1 + 46989 0.67 0.483089
Target:  5'- cGGCGAUAACGCCccucGGgCUGccuugaaccgcaGCGGCUa- -3'
miRNA:   3'- -UCGCUAUUGCGG----UCgGAC------------UGCCGGgu -5'
12324 3' -58.4 NC_003324.1 + 49611 0.67 0.483089
Target:  5'- uGGCGAUAcCGUCAuUCUGGCaGGCgCCAa -3'
miRNA:   3'- -UCGCUAUuGCGGUcGGACUG-CCG-GGU- -5'
12324 3' -58.4 NC_003324.1 + 31764 0.67 0.453393
Target:  5'- -cUGggGGCGCCAacGCCUGcCGGCCUc -3'
miRNA:   3'- ucGCuaUUGCGGU--CGGACuGCCGGGu -5'
12324 3' -58.4 NC_003324.1 + 14424 0.67 0.453393
Target:  5'- uGGgGAUcACGcCCGGCuCUGGCG-CCCAu -3'
miRNA:   3'- -UCgCUAuUGC-GGUCG-GACUGCcGGGU- -5'
12324 3' -58.4 NC_003324.1 + 34427 0.67 0.443716
Target:  5'- -uCGGUGAUGUCGGCC-GACGGCaCAu -3'
miRNA:   3'- ucGCUAUUGCGGUCGGaCUGCCGgGU- -5'
12324 3' -58.4 NC_003324.1 + 43572 0.67 0.443716
Target:  5'- cGCGc-AACGUCAGCCgauUGAgGGCCUg -3'
miRNA:   3'- uCGCuaUUGCGGUCGG---ACUgCCGGGu -5'
12324 3' -58.4 NC_003324.1 + 42191 0.68 0.434156
Target:  5'- cGGCacu-GCGCCGGagUGAuCGGCCCAa -3'
miRNA:   3'- -UCGcuauUGCGGUCggACU-GCCGGGU- -5'
12324 3' -58.4 NC_003324.1 + 28829 0.69 0.348882
Target:  5'- uGCGcuUGACGCCAGCCUGuucgagcacgcgcuuGCGaGCCgGa -3'
miRNA:   3'- uCGCu-AUUGCGGUCGGAC---------------UGC-CGGgU- -5'
12324 3' -58.4 NC_003324.1 + 19488 0.7 0.329515
Target:  5'- gGGCGAUAGCGUCGGCgUcGGCGuGCUUc -3'
miRNA:   3'- -UCGCUAUUGCGGUCGgA-CUGC-CGGGu -5'
12324 3' -58.4 NC_003324.1 + 25590 0.7 0.321682
Target:  5'- cGGCGGUGAUGacaUAGUCUGuCGGCCg- -3'
miRNA:   3'- -UCGCUAUUGCg--GUCGGACuGCCGGgu -5'
12324 3' -58.4 NC_003324.1 + 11146 0.7 0.299025
Target:  5'- cGCuu---CGCCGGUCUGGCGGCCg- -3'
miRNA:   3'- uCGcuauuGCGGUCGGACUGCCGGgu -5'
12324 3' -58.4 NC_003324.1 + 30264 0.71 0.277623
Target:  5'- cGGCGAUGAUGCgGGCCaagGcACGgucGCCCAa -3'
miRNA:   3'- -UCGCUAUUGCGgUCGGa--C-UGC---CGGGU- -5'
12324 3' -58.4 NC_003324.1 + 5890 0.75 0.15634
Target:  5'- uGGgGAUGACgGCCugcGCCuUGAUGGCCCGa -3'
miRNA:   3'- -UCgCUAUUG-CGGu--CGG-ACUGCCGGGU- -5'
12324 3' -58.4 NC_003324.1 + 17789 0.66 0.555652
Target:  5'- --gGGUAuCGCCAGCCUGAucuuCGGCg-- -3'
miRNA:   3'- ucgCUAUuGCGGUCGGACU----GCCGggu -5'
12324 3' -58.4 NC_003324.1 + 48842 0.66 0.555652
Target:  5'- gGGCGAccuugAGCGCUucgCUGAUGGCCUg -3'
miRNA:   3'- -UCGCUa----UUGCGGucgGACUGCCGGGu -5'
12324 3' -58.4 NC_003324.1 + 21195 0.67 0.493196
Target:  5'- uGCGcaAGCGCCAGCCcGACGuggaaGCCg- -3'
miRNA:   3'- uCGCuaUUGCGGUCGGaCUGC-----CGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.