miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12324 5' -54.6 NC_003324.1 + 35321 0.69 0.620826
Target:  5'- -aUUGcGCCGGCUGCuGCGguugcUGUUGCUg -3'
miRNA:   3'- cgAGC-UGGCCGGCGuUGCa----ACAACGG- -5'
12324 5' -54.6 NC_003324.1 + 21083 0.69 0.620826
Target:  5'- -gUCGGCC-GCCGCGGCGcgUGcUGCg -3'
miRNA:   3'- cgAGCUGGcCGGCGUUGCa-ACaACGg -5'
12324 5' -54.6 NC_003324.1 + 14589 0.69 0.609907
Target:  5'- cGCaagCGGCCGGCgGCGcagGCGguagcgUGgcgGCCg -3'
miRNA:   3'- -CGa--GCUGGCCGgCGU---UGCa-----ACaa-CGG- -5'
12324 5' -54.6 NC_003324.1 + 11345 0.69 0.588134
Target:  5'- --gCGACgCGGUCGCuGAUGUUGUcaaucaguuUGCCg -3'
miRNA:   3'- cgaGCUG-GCCGGCG-UUGCAACA---------ACGG- -5'
12324 5' -54.6 NC_003324.1 + 40248 0.7 0.570817
Target:  5'- cGCUCGACU-GCCGCcuuGCGUgcgGUccggggcuuggcgggUGCCu -3'
miRNA:   3'- -CGAGCUGGcCGGCGu--UGCAa--CA---------------ACGG- -5'
12324 5' -54.6 NC_003324.1 + 35392 0.7 0.545088
Target:  5'- uGCUCGGCCGccGCgCGCAugGUUuccucGCCc -3'
miRNA:   3'- -CGAGCUGGC--CG-GCGUugCAAcaa--CGG- -5'
12324 5' -54.6 NC_003324.1 + 40042 0.7 0.545088
Target:  5'- aGCUCG-UCGGCCGUccacCGUaGUUGCg -3'
miRNA:   3'- -CGAGCuGGCCGGCGuu--GCAaCAACGg -5'
12324 5' -54.6 NC_003324.1 + 56220 0.71 0.513481
Target:  5'- cGCUCGAUCGGCgGCGACaucc-UGCa -3'
miRNA:   3'- -CGAGCUGGCCGgCGUUGcaacaACGg -5'
12324 5' -54.6 NC_003324.1 + 5530 0.71 0.492831
Target:  5'- cGCUCGAUCGGCauCAA-GUUcccgGUUGCCg -3'
miRNA:   3'- -CGAGCUGGCCGgcGUUgCAA----CAACGG- -5'
12324 5' -54.6 NC_003324.1 + 20661 0.71 0.48265
Target:  5'- uGCuUCGACCaGGCgGCGAUGcUUGgaaGCCg -3'
miRNA:   3'- -CG-AGCUGG-CCGgCGUUGC-AACaa-CGG- -5'
12324 5' -54.6 NC_003324.1 + 14646 0.71 0.492831
Target:  5'- cGC-CGGCaGGCCGCGACccaUGUUGaCCa -3'
miRNA:   3'- -CGaGCUGgCCGGCGUUGca-ACAAC-GG- -5'
12324 5' -54.6 NC_003324.1 + 31247 0.72 0.433372
Target:  5'- cGC-CG-CCGGCCGCAcugcGCGUUuUUGCg -3'
miRNA:   3'- -CGaGCuGGCCGGCGU----UGCAAcAACGg -5'
12324 5' -54.6 NC_003324.1 + 16328 0.72 0.42387
Target:  5'- --aCGcAgCGGuCCGCGACGgcGUUGCCg -3'
miRNA:   3'- cgaGC-UgGCC-GGCGUUGCaaCAACGG- -5'
12324 5' -54.6 NC_003324.1 + 23404 0.72 0.414493
Target:  5'- cGCUCGGCUuucucguuGGCCGCGuCGgUGgcGCCc -3'
miRNA:   3'- -CGAGCUGG--------CCGGCGUuGCaACaaCGG- -5'
12324 5' -54.6 NC_003324.1 + 29729 0.73 0.396129
Target:  5'- aCUCGAucCCGGCUcagGCGGCGgcGUUGCg -3'
miRNA:   3'- cGAGCU--GGCCGG---CGUUGCaaCAACGg -5'
12324 5' -54.6 NC_003324.1 + 54149 0.73 0.387146
Target:  5'- gGCUCGacgggaGCUGGCCGCGucauguCGgcgUGUUGCa -3'
miRNA:   3'- -CGAGC------UGGCCGGCGUu-----GCa--ACAACGg -5'
12324 5' -54.6 NC_003324.1 + 20473 0.73 0.404328
Target:  5'- cGCUCGAUC-GCCGCAucgcggaGCGggaUGUUGCg -3'
miRNA:   3'- -CGAGCUGGcCGGCGU-------UGCa--ACAACGg -5'
12324 5' -54.6 NC_003324.1 + 11161 0.73 0.387146
Target:  5'- --gCGGCCGGCuCGCAcaGCGUUGaggUGCg -3'
miRNA:   3'- cgaGCUGGCCG-GCGU--UGCAACa--ACGg -5'
12324 5' -54.6 NC_003324.1 + 4935 1.15 0.000576
Target:  5'- gGCUCGACCGGCCGCAACGUUGUUGCCg -3'
miRNA:   3'- -CGAGCUGGCCGGCGUUGCAACAACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.