Results 21 - 39 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12324 | 5' | -54.6 | NC_003324.1 | + | 56220 | 0.71 | 0.513481 |
Target: 5'- cGCUCGAUCGGCgGCGACaucc-UGCa -3' miRNA: 3'- -CGAGCUGGCCGgCGUUGcaacaACGg -5' |
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12324 | 5' | -54.6 | NC_003324.1 | + | 40042 | 0.7 | 0.545088 |
Target: 5'- aGCUCG-UCGGCCGUccacCGUaGUUGCg -3' miRNA: 3'- -CGAGCuGGCCGGCGuu--GCAaCAACGg -5' |
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12324 | 5' | -54.6 | NC_003324.1 | + | 35392 | 0.7 | 0.545088 |
Target: 5'- uGCUCGGCCGccGCgCGCAugGUUuccucGCCc -3' miRNA: 3'- -CGAGCUGGC--CG-GCGUugCAAcaa--CGG- -5' |
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12324 | 5' | -54.6 | NC_003324.1 | + | 14565 | 0.68 | 0.675375 |
Target: 5'- gGCUgcACCGGCuucCGCGACGg---UGCCa -3' miRNA: 3'- -CGAgcUGGCCG---GCGUUGCaacaACGG- -5' |
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12324 | 5' | -54.6 | NC_003324.1 | + | 9745 | 0.68 | 0.675375 |
Target: 5'- cGCcCGGCCccacGCCGCccagcGCGUUggcGUUGCCg -3' miRNA: 3'- -CGaGCUGGc---CGGCGu----UGCAA---CAACGG- -5' |
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12324 | 5' | -54.6 | NC_003324.1 | + | 31324 | 0.68 | 0.664505 |
Target: 5'- cGCgcaGugCGGCCgGCGGCGcUGgcGCUg -3' miRNA: 3'- -CGag-CugGCCGG-CGUUGCaACaaCGG- -5' |
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12324 | 5' | -54.6 | NC_003324.1 | + | 42246 | 0.68 | 0.653604 |
Target: 5'- cGUUCGGCaaguacgaucgCGGCC-CAugGUcUGUUGCUg -3' miRNA: 3'- -CGAGCUG-----------GCCGGcGUugCA-ACAACGG- -5' |
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12324 | 5' | -54.6 | NC_003324.1 | + | 14646 | 0.71 | 0.492831 |
Target: 5'- cGC-CGGCaGGCCGCGACccaUGUUGaCCa -3' miRNA: 3'- -CGaGCUGgCCGGCGUUGca-ACAAC-GG- -5' |
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12324 | 5' | -54.6 | NC_003324.1 | + | 29729 | 0.73 | 0.396129 |
Target: 5'- aCUCGAucCCGGCUcagGCGGCGgcGUUGCg -3' miRNA: 3'- cGAGCU--GGCCGG---CGUUGCaaCAACGg -5' |
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12324 | 5' | -54.6 | NC_003324.1 | + | 14998 | 0.68 | 0.686206 |
Target: 5'- cUUCGACCGGC----AUGUUGUUGaCCg -3' miRNA: 3'- cGAGCUGGCCGgcguUGCAACAAC-GG- -5' |
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12324 | 5' | -54.6 | NC_003324.1 | + | 37439 | 0.67 | 0.718346 |
Target: 5'- aGCUCGACCGGCaGU-ACGacaaucGCCg -3' miRNA: 3'- -CGAGCUGGCCGgCGuUGCaacaa-CGG- -5' |
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12324 | 5' | -54.6 | NC_003324.1 | + | 54143 | 0.67 | 0.718346 |
Target: 5'- cGgUCGGCCGauuccGCCGCAGCGaaa--GCCu -3' miRNA: 3'- -CgAGCUGGC-----CGGCGUUGCaacaaCGG- -5' |
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12324 | 5' | -54.6 | NC_003324.1 | + | 17398 | 0.67 | 0.728906 |
Target: 5'- cCUCGAUCGGUgGUGACcagGUccUGCCa -3' miRNA: 3'- cGAGCUGGCCGgCGUUGcaaCA--ACGG- -5' |
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12324 | 5' | -54.6 | NC_003324.1 | + | 11837 | 0.67 | 0.748698 |
Target: 5'- uGCgCGACCgGGCCGgGcacggcauugaccACGUUGg-GCCa -3' miRNA: 3'- -CGaGCUGG-CCGGCgU-------------UGCAACaaCGG- -5' |
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12324 | 5' | -54.6 | NC_003324.1 | + | 31854 | 0.67 | 0.749729 |
Target: 5'- gGCcCGAagaGGCCGgcaGGCGUUGgcGCCc -3' miRNA: 3'- -CGaGCUgg-CCGGCg--UUGCAACaaCGG- -5' |
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12324 | 5' | -54.6 | NC_003324.1 | + | 38786 | 0.66 | 0.77008 |
Target: 5'- uCUCGACCcGUCGgAGCGacuUUGCCg -3' miRNA: 3'- cGAGCUGGcCGGCgUUGCaacAACGG- -5' |
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12324 | 5' | -54.6 | NC_003324.1 | + | 27151 | 0.66 | 0.78987 |
Target: 5'- aGC-CGcACCGGCCaCAACGguaacGCCg -3' miRNA: 3'- -CGaGC-UGGCCGGcGUUGCaacaaCGG- -5' |
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12324 | 5' | -54.6 | NC_003324.1 | + | 18889 | 0.66 | 0.799528 |
Target: 5'- cGC-CGACCuucGCCGCGccauggacccGCGcaucGUUGCCg -3' miRNA: 3'- -CGaGCUGGc--CGGCGU----------UGCaa--CAACGG- -5' |
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12324 | 5' | -54.6 | NC_003324.1 | + | 4935 | 1.15 | 0.000576 |
Target: 5'- gGCUCGACCGGCCGCAACGUUGUUGCCg -3' miRNA: 3'- -CGAGCUGGCCGGCGUUGCAACAACGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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