miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12324 5' -54.6 NC_003324.1 + 31324 0.68 0.664505
Target:  5'- cGCgcaGugCGGCCgGCGGCGcUGgcGCUg -3'
miRNA:   3'- -CGag-CugGCCGG-CGUUGCaACaaCGG- -5'
12324 5' -54.6 NC_003324.1 + 9745 0.68 0.675375
Target:  5'- cGCcCGGCCccacGCCGCccagcGCGUUggcGUUGCCg -3'
miRNA:   3'- -CGaGCUGGc---CGGCGu----UGCAA---CAACGG- -5'
12324 5' -54.6 NC_003324.1 + 14565 0.68 0.675375
Target:  5'- gGCUgcACCGGCuucCGCGACGg---UGCCa -3'
miRNA:   3'- -CGAgcUGGCCG---GCGUUGCaacaACGG- -5'
12324 5' -54.6 NC_003324.1 + 14998 0.68 0.686206
Target:  5'- cUUCGACCGGC----AUGUUGUUGaCCg -3'
miRNA:   3'- cGAGCUGGCCGgcguUGCAACAAC-GG- -5'
12324 5' -54.6 NC_003324.1 + 42152 0.67 0.718346
Target:  5'- aGCaacaGACCaugGGCCGCGAuCGUacUUGCCg -3'
miRNA:   3'- -CGag--CUGG---CCGGCGUU-GCAacAACGG- -5'
12324 5' -54.6 NC_003324.1 + 37439 0.67 0.718346
Target:  5'- aGCUCGACCGGCaGU-ACGacaaucGCCg -3'
miRNA:   3'- -CGAGCUGGCCGgCGuUGCaacaa-CGG- -5'
12324 5' -54.6 NC_003324.1 + 54143 0.67 0.718346
Target:  5'- cGgUCGGCCGauuccGCCGCAGCGaaa--GCCu -3'
miRNA:   3'- -CgAGCUGGC-----CGGCGUUGCaacaaCGG- -5'
12324 5' -54.6 NC_003324.1 + 23727 0.67 0.727854
Target:  5'- cGC-CGGCUGcacgucacgaagaGCUGCGACGUUGc-GCCg -3'
miRNA:   3'- -CGaGCUGGC-------------CGGCGUUGCAACaaCGG- -5'
12324 5' -54.6 NC_003324.1 + 17398 0.67 0.728906
Target:  5'- cCUCGAUCGGUgGUGACcagGUccUGCCa -3'
miRNA:   3'- cGAGCUGGCCGgCGUUGcaaCA--ACGG- -5'
12324 5' -54.6 NC_003324.1 + 40294 0.67 0.728906
Target:  5'- uCUUGACCuucGCCuuAACGUUGcUGCCc -3'
miRNA:   3'- cGAGCUGGc--CGGcgUUGCAACaACGG- -5'
12324 5' -54.6 NC_003324.1 + 36178 0.67 0.728906
Target:  5'- cGC-CGACCuGCUGCAGCauacugaUGUUGCg -3'
miRNA:   3'- -CGaGCUGGcCGGCGUUGca-----ACAACGg -5'
12324 5' -54.6 NC_003324.1 + 29277 0.67 0.739371
Target:  5'- cGCUCGAUCGGCgGauuGCGUuccagcuccUGcUGCUc -3'
miRNA:   3'- -CGAGCUGGCCGgCgu-UGCA---------ACaACGG- -5'
12324 5' -54.6 NC_003324.1 + 11837 0.67 0.748698
Target:  5'- uGCgCGACCgGGCCGgGcacggcauugaccACGUUGg-GCCa -3'
miRNA:   3'- -CGaGCUGG-CCGGCgU-------------UGCAACaaCGG- -5'
12324 5' -54.6 NC_003324.1 + 31854 0.67 0.749729
Target:  5'- gGCcCGAagaGGCCGgcaGGCGUUGgcGCCc -3'
miRNA:   3'- -CGaGCUgg-CCGGCg--UUGCAACaaCGG- -5'
12324 5' -54.6 NC_003324.1 + 38786 0.66 0.77008
Target:  5'- uCUCGACCcGUCGgAGCGacuUUGCCg -3'
miRNA:   3'- cGAGCUGGcCGGCgUUGCaacAACGG- -5'
12324 5' -54.6 NC_003324.1 + 4848 0.66 0.77008
Target:  5'- --gCG-CCGGCaaCAACGUUGcgGCCg -3'
miRNA:   3'- cgaGCuGGCCGgcGUUGCAACaaCGG- -5'
12324 5' -54.6 NC_003324.1 + 27151 0.66 0.78987
Target:  5'- aGC-CGcACCGGCCaCAACGguaacGCCg -3'
miRNA:   3'- -CGaGC-UGGCCGGcGUUGCaacaaCGG- -5'
12324 5' -54.6 NC_003324.1 + 45124 0.66 0.78987
Target:  5'- uCUCGACCGcuGCCGgcguaucaaCAACGaUGU-GCCu -3'
miRNA:   3'- cGAGCUGGC--CGGC---------GUUGCaACAaCGG- -5'
12324 5' -54.6 NC_003324.1 + 18889 0.66 0.799528
Target:  5'- cGC-CGACCuucGCCGCGccauggacccGCGcaucGUUGCCg -3'
miRNA:   3'- -CGaGCUGGc--CGGCGU----------UGCaa--CAACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.