Results 61 - 80 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12326 | 5' | -54.8 | NC_003324.1 | + | 19601 | 0.74 | 0.286996 |
Target: 5'- aAGCGGCugAUGGACGCCuucCgCGGCAa -3' miRNA: 3'- -UCGCUGugUAUUUGCGGuc-G-GCCGUg -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 19375 | 0.68 | 0.590072 |
Target: 5'- cAGCGAUGgAUcGACGCCGGCgCGcGuCGCg -3' miRNA: 3'- -UCGCUGUgUAuUUGCGGUCG-GC-C-GUG- -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 19097 | 0.68 | 0.601163 |
Target: 5'- uGCGcauCGCGUucGAgGCCAGCCGcGUGCa -3' miRNA: 3'- uCGCu--GUGUAu-UUgCGGUCGGC-CGUG- -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 18131 | 0.69 | 0.535333 |
Target: 5'- cAGCGGCGUGUAuucGACGCCGGuuucgccgacaCCGGCAa -3' miRNA: 3'- -UCGCUGUGUAU---UUGCGGUC-----------GGCCGUg -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 17900 | 0.69 | 0.509676 |
Target: 5'- gGGCGACACcccgaaugcgcgccGUGAggcACGCUAccagaucGCCGGCAUc -3' miRNA: 3'- -UCGCUGUG--------------UAUU---UGCGGU-------CGGCCGUG- -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 17693 | 0.68 | 0.568009 |
Target: 5'- cGGCGGCAuCGUGcucAACGgCGcGCCGGgGCa -3' miRNA: 3'- -UCGCUGU-GUAU---UUGCgGU-CGGCCgUG- -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 16639 | 0.69 | 0.539654 |
Target: 5'- cGGCGAgACgAUGAGCaGCCAgccccucacccucucGCCGaGCACg -3' miRNA: 3'- -UCGCUgUG-UAUUUG-CGGU---------------CGGC-CGUG- -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 15547 | 0.68 | 0.590072 |
Target: 5'- cGGCGACAUGgaAAGCGCCGaCCGGguUc -3' miRNA: 3'- -UCGCUGUGUa-UUUGCGGUcGGCCguG- -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 14797 | 0.72 | 0.385261 |
Target: 5'- cGCGGCGaa-GAACG-CGGCCGGCAUc -3' miRNA: 3'- uCGCUGUguaUUUGCgGUCGGCCGUG- -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 14599 | 0.7 | 0.462049 |
Target: 5'- cGGCGGCGCAggcgguAGCGUggCGGCCGGaGCu -3' miRNA: 3'- -UCGCUGUGUau----UUGCG--GUCGGCCgUG- -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 14553 | 0.68 | 0.588965 |
Target: 5'- aGGcCGACguggucaACAUGGgucGCgGCCuGCCGGCGCa -3' miRNA: 3'- -UC-GCUG-------UGUAUU---UG-CGGuCGGCCGUG- -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 14529 | 0.66 | 0.744063 |
Target: 5'- cGcCGAUGCuUGGACGCCGGCaugGGCcCa -3' miRNA: 3'- uC-GCUGUGuAUUUGCGGUCGg--CCGuG- -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 14338 | 0.66 | 0.700997 |
Target: 5'- gAGCGAgGCAgcugcagAAGCGCgGGCCGacGUAUc -3' miRNA: 3'- -UCGCUgUGUa------UUUGCGgUCGGC--CGUG- -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 13710 | 0.68 | 0.623416 |
Target: 5'- aAGUGuCGCGUcGGACGgCGGCaGGCACu -3' miRNA: 3'- -UCGCuGUGUA-UUUGCgGUCGgCCGUG- -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 13175 | 0.67 | 0.656829 |
Target: 5'- cAGCGAggcUGCGUcgGCGgCGGUCGGCGg -3' miRNA: 3'- -UCGCU---GUGUAuuUGCgGUCGGCCGUg -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 12892 | 0.69 | 0.535333 |
Target: 5'- uGCGGCGCGUcgAAACGCUGgaugguuuugcuGCCaGGCGCc -3' miRNA: 3'- uCGCUGUGUA--UUUGCGGU------------CGG-CCGUG- -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 10708 | 0.66 | 0.690029 |
Target: 5'- uAGCGACACGgagccACgGCCAGCguugGGCGa -3' miRNA: 3'- -UCGCUGUGUauu--UG-CGGUCGg---CCGUg -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 10198 | 0.69 | 0.534254 |
Target: 5'- uAGUG-CuCAUcgGCGCCAauaucauGCCGGCGCa -3' miRNA: 3'- -UCGCuGuGUAuuUGCGGU-------CGGCCGUG- -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 9316 | 0.66 | 0.704274 |
Target: 5'- uGGCGGCACcaacaugAUGAACuacaacggcaaucuCCAGCuCGGCGCc -3' miRNA: 3'- -UCGCUGUG-------UAUUUGc-------------GGUCG-GCCGUG- -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 9219 | 0.7 | 0.503341 |
Target: 5'- uGCGGCGCGguGAUGCU-GCCGGUAa -3' miRNA: 3'- uCGCUGUGUauUUGCGGuCGGCCGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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