miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12326 5' -54.8 NC_003324.1 + 43897 0.7 0.482482
Target:  5'- cGGCGGCcaucCGUGAuuucacGCGCCuuGCCGGCGu -3'
miRNA:   3'- -UCGCUGu---GUAUU------UGCGGu-CGGCCGUg -5'
12326 5' -54.8 NC_003324.1 + 7292 0.7 0.482482
Target:  5'- aAGCGACAgugcgggguguCAaagGGACGCCaucgAGCuCGGCGCg -3'
miRNA:   3'- -UCGCUGU-----------GUa--UUUGCGG----UCG-GCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 53778 0.7 0.476305
Target:  5'- aGGCGuCGCAUGcguccAGCGCCuguuucgccguaucaAGCuCGGCGCu -3'
miRNA:   3'- -UCGCuGUGUAU-----UUGCGG---------------UCG-GCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 24808 0.7 0.482482
Target:  5'- gGGCGACAagccugacacguCAUGGACGaaGGUCGGCGa -3'
miRNA:   3'- -UCGCUGU------------GUAUUUGCggUCGGCCGUg -5'
12326 5' -54.8 NC_003324.1 + 9219 0.7 0.503341
Target:  5'- uGCGGCGCGguGAUGCU-GCCGGUAa -3'
miRNA:   3'- uCGCUGUGUauUUGCGGuCGGCCGUg -5'
12326 5' -54.8 NC_003324.1 + 21963 0.7 0.452004
Target:  5'- cGGCGGCGCG---AUGCaccuuggAGCCGGCAUa -3'
miRNA:   3'- -UCGCUGUGUauuUGCGg------UCGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 14599 0.7 0.462049
Target:  5'- cGGCGGCGCAggcgguAGCGUggCGGCCGGaGCu -3'
miRNA:   3'- -UCGCUGUGUau----UUGCG--GUCGGCCgUG- -5'
12326 5' -54.8 NC_003324.1 + 8305 0.7 0.492861
Target:  5'- cAGCGucaucCGCAggguAACGCC-GUCGGCGCu -3'
miRNA:   3'- -UCGCu----GUGUau--UUGCGGuCGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 29973 0.7 0.492861
Target:  5'- cGGCGGCagccggguccGCAUcGAUcCCGGCCGGUGCa -3'
miRNA:   3'- -UCGCUG----------UGUAuUUGcGGUCGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 31765 0.7 0.503341
Target:  5'- uGGgGGCGCc--AACGCCuGCCGGCc- -3'
miRNA:   3'- -UCgCUGUGuauUUGCGGuCGGCCGug -5'
12326 5' -54.8 NC_003324.1 + 38088 0.7 0.503341
Target:  5'- uGGCGaaGCGCGUcgGCGCCGuGCUGGUg- -3'
miRNA:   3'- -UCGC--UGUGUAuuUGCGGU-CGGCCGug -5'
12326 5' -54.8 NC_003324.1 + 32578 0.7 0.462049
Target:  5'- gAGCGACAucgucgacacCGUGAuCGCCGaggcuGCCGGCGa -3'
miRNA:   3'- -UCGCUGU----------GUAUUuGCGGU-----CGGCCGUg -5'
12326 5' -54.8 NC_003324.1 + 38162 0.7 0.503341
Target:  5'- cGcCGACGCGcuu-CGCCAGaaGGCGCa -3'
miRNA:   3'- uC-GCUGUGUauuuGCGGUCggCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 41461 0.69 0.513918
Target:  5'- aGGCGGCAUugguaaggGGACGCgUAGCCacgGGCGCu -3'
miRNA:   3'- -UCGCUGUGua------UUUGCG-GUCGG---CCGUG- -5'
12326 5' -54.8 NC_003324.1 + 10198 0.69 0.534254
Target:  5'- uAGUG-CuCAUcgGCGCCAauaucauGCCGGCGCa -3'
miRNA:   3'- -UCGCuGuGUAuuUGCGGU-------CGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 45695 0.69 0.546158
Target:  5'- cGGCGAgGCGUGAGCaggGCaaucaGGCgaCGGCACg -3'
miRNA:   3'- -UCGCUgUGUAUUUG---CGg----UCG--GCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 39762 0.69 0.535333
Target:  5'- cGGCGGCACGUGcucGAUGaucuCGGCaCGGUGCa -3'
miRNA:   3'- -UCGCUGUGUAU---UUGCg---GUCG-GCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 7068 0.69 0.546158
Target:  5'- aGGCcGCGCGUGAGuucUGCCAGCgcaccaacuguUGGCGCg -3'
miRNA:   3'- -UCGcUGUGUAUUU---GCGGUCG-----------GCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 48725 0.69 0.535333
Target:  5'- gGGCGccaacCGCGUcgGCGCCAGCaGGCuGCa -3'
miRNA:   3'- -UCGCu----GUGUAuuUGCGGUCGgCCG-UG- -5'
12326 5' -54.8 NC_003324.1 + 1651 0.69 0.546158
Target:  5'- --aGAUugGUGAuCGCgGGCUGGCGCc -3'
miRNA:   3'- ucgCUGugUAUUuGCGgUCGGCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.