miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12327 5' -58.7 NC_003324.1 + 8185 1.05 0.000761
Target:  5'- uUUCAGCACAGGCGCAACGGCGACCGUg -3'
miRNA:   3'- -AAGUCGUGUCCGCGUUGCCGCUGGCA- -5'
12327 5' -58.7 NC_003324.1 + 14601 0.78 0.076697
Target:  5'- -gCGGCGCAGGCGguAgcgUGGCGGCCGg -3'
miRNA:   3'- aaGUCGUGUCCGCguU---GCCGCUGGCa -5'
12327 5' -58.7 NC_003324.1 + 25698 0.74 0.149973
Target:  5'- aUCAGCagccguGCcGGCGCAGCaGCGGCCGa -3'
miRNA:   3'- aAGUCG------UGuCCGCGUUGcCGCUGGCa -5'
12327 5' -58.7 NC_003324.1 + 21163 0.74 0.154116
Target:  5'- -gCAGCAC--GCGCcGCGGCGGCCGa -3'
miRNA:   3'- aaGUCGUGucCGCGuUGCCGCUGGCa -5'
12327 5' -58.7 NC_003324.1 + 39170 0.74 0.162715
Target:  5'- aUCGGCACcuucuGGCGCAgccACGGCGgcaACCGa -3'
miRNA:   3'- aAGUCGUGu----CCGCGU---UGCCGC---UGGCa -5'
12327 5' -58.7 NC_003324.1 + 57380 0.73 0.191151
Target:  5'- cUCGGCGgAGGCGagGGCGGCacGACCGg -3'
miRNA:   3'- aAGUCGUgUCCGCg-UUGCCG--CUGGCa -5'
12327 5' -58.7 NC_003324.1 + 23546 0.73 0.196295
Target:  5'- -aCAGCguggcgGCGGGCGCGcuCGGCGACgGUa -3'
miRNA:   3'- aaGUCG------UGUCCGCGUu-GCCGCUGgCA- -5'
12327 5' -58.7 NC_003324.1 + 29218 0.72 0.229748
Target:  5'- -gCAGCACuacGGUGCGcucaccaagACGGCGGCUGUu -3'
miRNA:   3'- aaGUCGUGu--CCGCGU---------UGCCGCUGGCA- -5'
12327 5' -58.7 NC_003324.1 + 19473 0.71 0.235771
Target:  5'- cUCAuGCAC-GGCGCGACGcGCG-CCGg -3'
miRNA:   3'- aAGU-CGUGuCCGCGUUGC-CGCuGGCa -5'
12327 5' -58.7 NC_003324.1 + 39776 0.71 0.241925
Target:  5'- --gGGCACAuGGCGCGACGuGCGGCa-- -3'
miRNA:   3'- aagUCGUGU-CCGCGUUGC-CGCUGgca -5'
12327 5' -58.7 NC_003324.1 + 50412 0.7 0.288806
Target:  5'- --gAGCAUAGGCaGCGGCgaucaGGCGAUCGUc -3'
miRNA:   3'- aagUCGUGUCCG-CGUUG-----CCGCUGGCA- -5'
12327 5' -58.7 NC_003324.1 + 49095 0.7 0.303451
Target:  5'- --aAGCAUGGcCGCGAgGGCGGCCGa -3'
miRNA:   3'- aagUCGUGUCcGCGUUgCCGCUGGCa -5'
12327 5' -58.7 NC_003324.1 + 53415 0.69 0.326476
Target:  5'- gUCugcGCACGGaugaaguccauGCGCucAACGGCGACCGa -3'
miRNA:   3'- aAGu--CGUGUC-----------CGCG--UUGCCGCUGGCa -5'
12327 5' -58.7 NC_003324.1 + 5008 0.68 0.359151
Target:  5'- cUUCGGUcCAGGUGUAGCGGaaGCCGc -3'
miRNA:   3'- -AAGUCGuGUCCGCGUUGCCgcUGGCa -5'
12327 5' -58.7 NC_003324.1 + 13177 0.68 0.359151
Target:  5'- gUCAGCG-AGGCuGCGuCGGCGGCgGUc -3'
miRNA:   3'- aAGUCGUgUCCG-CGUuGCCGCUGgCA- -5'
12327 5' -58.7 NC_003324.1 + 5568 0.68 0.376325
Target:  5'- cUUCGcCGCGGGCGuCAuCGGCcuGACCGUg -3'
miRNA:   3'- -AAGUcGUGUCCGC-GUuGCCG--CUGGCA- -5'
12327 5' -58.7 NC_003324.1 + 17556 0.68 0.376325
Target:  5'- cUCAGaCGCucGGCGCGACGGCagGACUu- -3'
miRNA:   3'- aAGUC-GUGu-CCGCGUUGCCG--CUGGca -5'
12327 5' -58.7 NC_003324.1 + 47737 0.68 0.384232
Target:  5'- -cCAGCGCAccGGCGUgccacagcucgacGAUGGCGGCCc- -3'
miRNA:   3'- aaGUCGUGU--CCGCG-------------UUGCCGCUGGca -5'
12327 5' -58.7 NC_003324.1 + 8329 0.68 0.385118
Target:  5'- gUCGGCGCu--CGUuACGGUGACCGUc -3'
miRNA:   3'- aAGUCGUGuccGCGuUGCCGCUGGCA- -5'
12327 5' -58.7 NC_003324.1 + 38093 0.68 0.394045
Target:  5'- --aAGCGCGucGGCGCcguGCuGGUGACCGUu -3'
miRNA:   3'- aagUCGUGU--CCGCGu--UG-CCGCUGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.