miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12327 5' -58.7 NC_003324.1 + 14601 0.78 0.076697
Target:  5'- -gCGGCGCAGGCGguAgcgUGGCGGCCGg -3'
miRNA:   3'- aaGUCGUGUCCGCguU---GCCGCUGGCa -5'
12327 5' -58.7 NC_003324.1 + 6735 0.66 0.510728
Target:  5'- aUCGGUAaAGGUGgcCAACGGCG-CCGa -3'
miRNA:   3'- aAGUCGUgUCCGC--GUUGCCGCuGGCa -5'
12327 5' -58.7 NC_003324.1 + 47615 0.66 0.510728
Target:  5'- cUUUAcCACGccGCGCAugACGGCGACCGg -3'
miRNA:   3'- -AAGUcGUGUc-CGCGU--UGCCGCUGGCa -5'
12327 5' -58.7 NC_003324.1 + 16124 0.66 0.50041
Target:  5'- gUCcuGCGCAgGGCGCuucgguAGCGGgGGCCGc -3'
miRNA:   3'- aAGu-CGUGU-CCGCG------UUGCCgCUGGCa -5'
12327 5' -58.7 NC_003324.1 + 2181 0.66 0.490186
Target:  5'- -aCAGCGCAGGaGCugcucACGG-GGCCGa -3'
miRNA:   3'- aaGUCGUGUCCgCGu----UGCCgCUGGCa -5'
12327 5' -58.7 NC_003324.1 + 3269 0.66 0.480059
Target:  5'- --aAGCGgAGG-GCGGCGGCaACCGUc -3'
miRNA:   3'- aagUCGUgUCCgCGUUGCCGcUGGCA- -5'
12327 5' -58.7 NC_003324.1 + 24592 0.66 0.470036
Target:  5'- -cCAGCGCAGGauCAuCGG-GGCCGUa -3'
miRNA:   3'- aaGUCGUGUCCgcGUuGCCgCUGGCA- -5'
12327 5' -58.7 NC_003324.1 + 41561 0.67 0.46012
Target:  5'- -gCGGCGCGGGCcuguuccucGCA--GGUGGCCGUc -3'
miRNA:   3'- aaGUCGUGUCCG---------CGUugCCGCUGGCA- -5'
12327 5' -58.7 NC_003324.1 + 37454 0.67 0.439667
Target:  5'- -aCAGCGCGGGauggaGCcggggucuccgggAugGGCGACUGg -3'
miRNA:   3'- aaGUCGUGUCCg----CG-------------UugCCGCUGGCa -5'
12327 5' -58.7 NC_003324.1 + 30762 0.67 0.412296
Target:  5'- --aAGCACGGGCGCGGucCuGCG-CCGUa -3'
miRNA:   3'- aagUCGUGUCCGCGUU--GcCGCuGGCA- -5'
12327 5' -58.7 NC_003324.1 + 16324 0.67 0.412296
Target:  5'- -gCAGaCGCAGcggucCGCGACGGCGuuGCCGUc -3'
miRNA:   3'- aaGUC-GUGUCc----GCGUUGCCGC--UGGCA- -5'
12327 5' -58.7 NC_003324.1 + 39170 0.74 0.162715
Target:  5'- aUCGGCACcuucuGGCGCAgccACGGCGgcaACCGa -3'
miRNA:   3'- aAGUCGUGu----CCGCGU---UGCCGC---UGGCa -5'
12327 5' -58.7 NC_003324.1 + 23546 0.73 0.196295
Target:  5'- -aCAGCguggcgGCGGGCGCGcuCGGCGACgGUa -3'
miRNA:   3'- aaGUCG------UGUCCGCGUu-GCCGCUGgCA- -5'
12327 5' -58.7 NC_003324.1 + 29218 0.72 0.229748
Target:  5'- -gCAGCACuacGGUGCGcucaccaagACGGCGGCUGUu -3'
miRNA:   3'- aaGUCGUGu--CCGCGU---------UGCCGCUGGCA- -5'
12327 5' -58.7 NC_003324.1 + 5568 0.68 0.376325
Target:  5'- cUUCGcCGCGGGCGuCAuCGGCcuGACCGUg -3'
miRNA:   3'- -AAGUcGUGUCCGC-GUuGCCG--CUGGCA- -5'
12327 5' -58.7 NC_003324.1 + 8329 0.68 0.385118
Target:  5'- gUCGGCGCu--CGUuACGGUGACCGUc -3'
miRNA:   3'- aAGUCGUGuccGCGuUGCCGCUGGCA- -5'
12327 5' -58.7 NC_003324.1 + 38093 0.68 0.394045
Target:  5'- --aAGCGCGucGGCGCcguGCuGGUGACCGUu -3'
miRNA:   3'- aagUCGUGU--CCGCGu--UG-CCGCUGGCA- -5'
12327 5' -58.7 NC_003324.1 + 53184 0.68 0.403105
Target:  5'- -aCAGCAUgugguGGGUgGUAGCuGGCGGCCGg -3'
miRNA:   3'- aaGUCGUG-----UCCG-CGUUG-CCGCUGGCa -5'
12327 5' -58.7 NC_003324.1 + 8185 1.05 0.000761
Target:  5'- uUUCAGCACAGGCGCAACGGCGACCGUg -3'
miRNA:   3'- -AAGUCGUGUCCGCGUUGCCGCUGGCA- -5'
12327 5' -58.7 NC_003324.1 + 5632 0.66 0.510728
Target:  5'- -gCGGCGaAGGuUGCGGCGGCaACCGg -3'
miRNA:   3'- aaGUCGUgUCC-GCGUUGCCGcUGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.