Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12327 | 5' | -58.7 | NC_003324.1 | + | 14601 | 0.78 | 0.076697 |
Target: 5'- -gCGGCGCAGGCGguAgcgUGGCGGCCGg -3' miRNA: 3'- aaGUCGUGUCCGCguU---GCCGCUGGCa -5' |
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12327 | 5' | -58.7 | NC_003324.1 | + | 6735 | 0.66 | 0.510728 |
Target: 5'- aUCGGUAaAGGUGgcCAACGGCG-CCGa -3' miRNA: 3'- aAGUCGUgUCCGC--GUUGCCGCuGGCa -5' |
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12327 | 5' | -58.7 | NC_003324.1 | + | 47615 | 0.66 | 0.510728 |
Target: 5'- cUUUAcCACGccGCGCAugACGGCGACCGg -3' miRNA: 3'- -AAGUcGUGUc-CGCGU--UGCCGCUGGCa -5' |
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12327 | 5' | -58.7 | NC_003324.1 | + | 16124 | 0.66 | 0.50041 |
Target: 5'- gUCcuGCGCAgGGCGCuucgguAGCGGgGGCCGc -3' miRNA: 3'- aAGu-CGUGU-CCGCG------UUGCCgCUGGCa -5' |
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12327 | 5' | -58.7 | NC_003324.1 | + | 2181 | 0.66 | 0.490186 |
Target: 5'- -aCAGCGCAGGaGCugcucACGG-GGCCGa -3' miRNA: 3'- aaGUCGUGUCCgCGu----UGCCgCUGGCa -5' |
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12327 | 5' | -58.7 | NC_003324.1 | + | 3269 | 0.66 | 0.480059 |
Target: 5'- --aAGCGgAGG-GCGGCGGCaACCGUc -3' miRNA: 3'- aagUCGUgUCCgCGUUGCCGcUGGCA- -5' |
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12327 | 5' | -58.7 | NC_003324.1 | + | 24592 | 0.66 | 0.470036 |
Target: 5'- -cCAGCGCAGGauCAuCGG-GGCCGUa -3' miRNA: 3'- aaGUCGUGUCCgcGUuGCCgCUGGCA- -5' |
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12327 | 5' | -58.7 | NC_003324.1 | + | 41561 | 0.67 | 0.46012 |
Target: 5'- -gCGGCGCGGGCcuguuccucGCA--GGUGGCCGUc -3' miRNA: 3'- aaGUCGUGUCCG---------CGUugCCGCUGGCA- -5' |
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12327 | 5' | -58.7 | NC_003324.1 | + | 37454 | 0.67 | 0.439667 |
Target: 5'- -aCAGCGCGGGauggaGCcggggucuccgggAugGGCGACUGg -3' miRNA: 3'- aaGUCGUGUCCg----CG-------------UugCCGCUGGCa -5' |
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12327 | 5' | -58.7 | NC_003324.1 | + | 30762 | 0.67 | 0.412296 |
Target: 5'- --aAGCACGGGCGCGGucCuGCG-CCGUa -3' miRNA: 3'- aagUCGUGUCCGCGUU--GcCGCuGGCA- -5' |
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12327 | 5' | -58.7 | NC_003324.1 | + | 16324 | 0.67 | 0.412296 |
Target: 5'- -gCAGaCGCAGcggucCGCGACGGCGuuGCCGUc -3' miRNA: 3'- aaGUC-GUGUCc----GCGUUGCCGC--UGGCA- -5' |
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12327 | 5' | -58.7 | NC_003324.1 | + | 39170 | 0.74 | 0.162715 |
Target: 5'- aUCGGCACcuucuGGCGCAgccACGGCGgcaACCGa -3' miRNA: 3'- aAGUCGUGu----CCGCGU---UGCCGC---UGGCa -5' |
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12327 | 5' | -58.7 | NC_003324.1 | + | 23546 | 0.73 | 0.196295 |
Target: 5'- -aCAGCguggcgGCGGGCGCGcuCGGCGACgGUa -3' miRNA: 3'- aaGUCG------UGUCCGCGUu-GCCGCUGgCA- -5' |
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12327 | 5' | -58.7 | NC_003324.1 | + | 29218 | 0.72 | 0.229748 |
Target: 5'- -gCAGCACuacGGUGCGcucaccaagACGGCGGCUGUu -3' miRNA: 3'- aaGUCGUGu--CCGCGU---------UGCCGCUGGCA- -5' |
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12327 | 5' | -58.7 | NC_003324.1 | + | 5568 | 0.68 | 0.376325 |
Target: 5'- cUUCGcCGCGGGCGuCAuCGGCcuGACCGUg -3' miRNA: 3'- -AAGUcGUGUCCGC-GUuGCCG--CUGGCA- -5' |
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12327 | 5' | -58.7 | NC_003324.1 | + | 8329 | 0.68 | 0.385118 |
Target: 5'- gUCGGCGCu--CGUuACGGUGACCGUc -3' miRNA: 3'- aAGUCGUGuccGCGuUGCCGCUGGCA- -5' |
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12327 | 5' | -58.7 | NC_003324.1 | + | 38093 | 0.68 | 0.394045 |
Target: 5'- --aAGCGCGucGGCGCcguGCuGGUGACCGUu -3' miRNA: 3'- aagUCGUGU--CCGCGu--UG-CCGCUGGCA- -5' |
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12327 | 5' | -58.7 | NC_003324.1 | + | 53184 | 0.68 | 0.403105 |
Target: 5'- -aCAGCAUgugguGGGUgGUAGCuGGCGGCCGg -3' miRNA: 3'- aaGUCGUG-----UCCG-CGUUG-CCGCUGGCa -5' |
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12327 | 5' | -58.7 | NC_003324.1 | + | 8185 | 1.05 | 0.000761 |
Target: 5'- uUUCAGCACAGGCGCAACGGCGACCGUg -3' miRNA: 3'- -AAGUCGUGUCCGCGUUGCCGCUGGCA- -5' |
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12327 | 5' | -58.7 | NC_003324.1 | + | 5632 | 0.66 | 0.510728 |
Target: 5'- -gCGGCGaAGGuUGCGGCGGCaACCGg -3' miRNA: 3'- aaGUCGUgUCC-GCGUUGCCGcUGGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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