miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12327 5' -58.7 NC_003324.1 + 17556 0.68 0.376325
Target:  5'- cUCAGaCGCucGGCGCGACGGCagGACUu- -3'
miRNA:   3'- aAGUC-GUGu-CCGCGUUGCCG--CUGGca -5'
12327 5' -58.7 NC_003324.1 + 13177 0.68 0.359151
Target:  5'- gUCAGCG-AGGCuGCGuCGGCGGCgGUc -3'
miRNA:   3'- aAGUCGUgUCCG-CGUuGCCGCUGgCA- -5'
12327 5' -58.7 NC_003324.1 + 5008 0.68 0.359151
Target:  5'- cUUCGGUcCAGGUGUAGCGGaaGCCGc -3'
miRNA:   3'- -AAGUCGuGUCCGCGUUGCCgcUGGCa -5'
12327 5' -58.7 NC_003324.1 + 53415 0.69 0.326476
Target:  5'- gUCugcGCACGGaugaaguccauGCGCucAACGGCGACCGa -3'
miRNA:   3'- aAGu--CGUGUC-----------CGCG--UUGCCGCUGGCa -5'
12327 5' -58.7 NC_003324.1 + 49095 0.7 0.303451
Target:  5'- --aAGCAUGGcCGCGAgGGCGGCCGa -3'
miRNA:   3'- aagUCGUGUCcGCGUUgCCGCUGGCa -5'
12327 5' -58.7 NC_003324.1 + 50412 0.7 0.288806
Target:  5'- --gAGCAUAGGCaGCGGCgaucaGGCGAUCGUc -3'
miRNA:   3'- aagUCGUGUCCG-CGUUG-----CCGCUGGCA- -5'
12327 5' -58.7 NC_003324.1 + 39776 0.71 0.241925
Target:  5'- --gGGCACAuGGCGCGACGuGCGGCa-- -3'
miRNA:   3'- aagUCGUGU-CCGCGUUGC-CGCUGgca -5'
12327 5' -58.7 NC_003324.1 + 19473 0.71 0.235771
Target:  5'- cUCAuGCAC-GGCGCGACGcGCG-CCGg -3'
miRNA:   3'- aAGU-CGUGuCCGCGUUGC-CGCuGGCa -5'
12327 5' -58.7 NC_003324.1 + 52947 0.67 0.411371
Target:  5'- cUCAuGCGCuugagcuuaucgaAGuCGUAGCGGCGGCCGUu -3'
miRNA:   3'- aAGU-CGUG-------------UCcGCGUUGCCGCUGGCA- -5'
12327 5' -58.7 NC_003324.1 + 24166 0.67 0.431061
Target:  5'- aUCAGCGCcaccguGGCGCAGC-GC-ACCGg -3'
miRNA:   3'- aAGUCGUGu-----CCGCGUUGcCGcUGGCa -5'
12327 5' -58.7 NC_003324.1 + 27461 0.67 0.440629
Target:  5'- cUCAGCGCAGGCcuguaGACGGCacgaaguACCGc -3'
miRNA:   3'- aAGUCGUGUCCGcg---UUGCCGc------UGGCa -5'
12327 5' -58.7 NC_003324.1 + 5632 0.66 0.510728
Target:  5'- -gCGGCGaAGGuUGCGGCGGCaACCGg -3'
miRNA:   3'- aaGUCGUgUCC-GCGUUGCCGcUGGCa -5'
12327 5' -58.7 NC_003324.1 + 20610 0.66 0.510728
Target:  5'- -cCGGCGCugauGGGCGCuuGCGGuCGGCgGg -3'
miRNA:   3'- aaGUCGUG----UCCGCGu-UGCC-GCUGgCa -5'
12327 5' -58.7 NC_003324.1 + 47435 0.66 0.510728
Target:  5'- -cCAGCACAGuaGCGAUaGCGAUCa- -3'
miRNA:   3'- aaGUCGUGUCcgCGUUGcCGCUGGca -5'
12327 5' -58.7 NC_003324.1 + 25253 0.66 0.490186
Target:  5'- gUgAGCu---GCGCGACGGCGcCCGUa -3'
miRNA:   3'- aAgUCGugucCGCGUUGCCGCuGGCA- -5'
12327 5' -58.7 NC_003324.1 + 35230 0.66 0.489168
Target:  5'- -aCGGCGCcgaaggugacgaAGGCGCugaggucAACGGCGACgGc -3'
miRNA:   3'- aaGUCGUG------------UCCGCG-------UUGCCGCUGgCa -5'
12327 5' -58.7 NC_003324.1 + 31309 0.66 0.480059
Target:  5'- -gCGGCGCuGGCGCuGGCGGgGGCauCGUc -3'
miRNA:   3'- aaGUCGUGuCCGCG-UUGCCgCUG--GCA- -5'
12327 5' -58.7 NC_003324.1 + 21086 0.66 0.470036
Target:  5'- uUUCGGCGC-GGC-CAucauuGCGGCGAuCCGa -3'
miRNA:   3'- -AAGUCGUGuCCGcGU-----UGCCGCU-GGCa -5'
12327 5' -58.7 NC_003324.1 + 36528 0.67 0.46012
Target:  5'- --aAGCGCcgcGGGCGCGACGGCauGCCc- -3'
miRNA:   3'- aagUCGUG---UCCGCGUUGCCGc-UGGca -5'
12327 5' -58.7 NC_003324.1 + 30378 0.67 0.449343
Target:  5'- gUCGcUACAGGCauguucgGCGGCuugGGCGACCGUg -3'
miRNA:   3'- aAGUcGUGUCCG-------CGUUG---CCGCUGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.