miRNA display CGI


Results 21 - 40 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12327 5' -58.7 NC_003324.1 + 30315 0.66 0.510728
Target:  5'- gUCGGCGguGGCGUcgcuCGGCGcguGCUGg -3'
miRNA:   3'- aAGUCGUguCCGCGuu--GCCGC---UGGCa -5'
12327 5' -58.7 NC_003324.1 + 21163 0.74 0.154116
Target:  5'- -gCAGCAC--GCGCcGCGGCGGCCGa -3'
miRNA:   3'- aaGUCGUGucCGCGuUGCCGCUGGCa -5'
12327 5' -58.7 NC_003324.1 + 25698 0.74 0.149973
Target:  5'- aUCAGCagccguGCcGGCGCAGCaGCGGCCGa -3'
miRNA:   3'- aAGUCG------UGuCCGCGUUGcCGCUGGCa -5'
12327 5' -58.7 NC_003324.1 + 5008 0.68 0.359151
Target:  5'- cUUCGGUcCAGGUGUAGCGGaaGCCGc -3'
miRNA:   3'- -AAGUCGuGUCCGCGUUGCCgcUGGCa -5'
12327 5' -58.7 NC_003324.1 + 8185 1.05 0.000761
Target:  5'- uUUCAGCACAGGCGCAACGGCGACCGUg -3'
miRNA:   3'- -AAGUCGUGUCCGCGUUGCCGCUGGCA- -5'
12327 5' -58.7 NC_003324.1 + 57380 0.73 0.191151
Target:  5'- cUCGGCGgAGGCGagGGCGGCacGACCGg -3'
miRNA:   3'- aAGUCGUgUCCGCg-UUGCCG--CUGGCa -5'
12327 5' -58.7 NC_003324.1 + 21086 0.66 0.470036
Target:  5'- uUUCGGCGC-GGC-CAucauuGCGGCGAuCCGa -3'
miRNA:   3'- -AAGUCGUGuCCGcGU-----UGCCGCU-GGCa -5'
12327 5' -58.7 NC_003324.1 + 3269 0.66 0.480059
Target:  5'- --aAGCGgAGG-GCGGCGGCaACCGUc -3'
miRNA:   3'- aagUCGUgUCCgCGUUGCCGcUGGCA- -5'
12327 5' -58.7 NC_003324.1 + 6735 0.66 0.510728
Target:  5'- aUCGGUAaAGGUGgcCAACGGCG-CCGa -3'
miRNA:   3'- aAGUCGUgUCCGC--GUUGCCGCuGGCa -5'
12327 5' -58.7 NC_003324.1 + 23546 0.73 0.196295
Target:  5'- -aCAGCguggcgGCGGGCGCGcuCGGCGACgGUa -3'
miRNA:   3'- aaGUCG------UGUCCGCGUu-GCCGCUGgCA- -5'
12327 5' -58.7 NC_003324.1 + 47615 0.66 0.510728
Target:  5'- cUUUAcCACGccGCGCAugACGGCGACCGg -3'
miRNA:   3'- -AAGUcGUGUc-CGCGU--UGCCGCUGGCa -5'
12327 5' -58.7 NC_003324.1 + 5568 0.68 0.376325
Target:  5'- cUUCGcCGCGGGCGuCAuCGGCcuGACCGUg -3'
miRNA:   3'- -AAGUcGUGUCCGC-GUuGCCG--CUGGCA- -5'
12327 5' -58.7 NC_003324.1 + 8329 0.68 0.385118
Target:  5'- gUCGGCGCu--CGUuACGGUGACCGUc -3'
miRNA:   3'- aAGUCGUGuccGCGuUGCCGCUGGCA- -5'
12327 5' -58.7 NC_003324.1 + 38093 0.68 0.394045
Target:  5'- --aAGCGCGucGGCGCcguGCuGGUGACCGUu -3'
miRNA:   3'- aagUCGUGU--CCGCGu--UG-CCGCUGGCA- -5'
12327 5' -58.7 NC_003324.1 + 2181 0.66 0.490186
Target:  5'- -aCAGCGCAGGaGCugcucACGG-GGCCGa -3'
miRNA:   3'- aaGUCGUGUCCgCGu----UGCCgCUGGCa -5'
12327 5' -58.7 NC_003324.1 + 16324 0.67 0.412296
Target:  5'- -gCAGaCGCAGcggucCGCGACGGCGuuGCCGUc -3'
miRNA:   3'- aaGUC-GUGUCc----GCGUUGCCGC--UGGCA- -5'
12327 5' -58.7 NC_003324.1 + 16124 0.66 0.50041
Target:  5'- gUCcuGCGCAgGGCGCuucgguAGCGGgGGCCGc -3'
miRNA:   3'- aAGu-CGUGU-CCGCG------UUGCCgCUGGCa -5'
12327 5' -58.7 NC_003324.1 + 37454 0.67 0.439667
Target:  5'- -aCAGCGCGGGauggaGCcggggucuccgggAugGGCGACUGg -3'
miRNA:   3'- aaGUCGUGUCCg----CG-------------UugCCGCUGGCa -5'
12327 5' -58.7 NC_003324.1 + 41561 0.67 0.46012
Target:  5'- -gCGGCGCGGGCcuguuccucGCA--GGUGGCCGUc -3'
miRNA:   3'- aaGUCGUGUCCG---------CGUugCCGCUGGCA- -5'
12327 5' -58.7 NC_003324.1 + 24592 0.66 0.470036
Target:  5'- -cCAGCGCAGGauCAuCGG-GGCCGUa -3'
miRNA:   3'- aaGUCGUGUCCgcGUuGCCgCUGGCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.