miRNA display CGI


Results 21 - 40 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12327 5' -58.7 NC_003324.1 + 25253 0.66 0.490186
Target:  5'- gUgAGCu---GCGCGACGGCGcCCGUa -3'
miRNA:   3'- aAgUCGugucCGCGUUGCCGCuGGCA- -5'
12327 5' -58.7 NC_003324.1 + 25698 0.74 0.149973
Target:  5'- aUCAGCagccguGCcGGCGCAGCaGCGGCCGa -3'
miRNA:   3'- aAGUCG------UGuCCGCGUUGcCGCUGGCa -5'
12327 5' -58.7 NC_003324.1 + 27461 0.67 0.440629
Target:  5'- cUCAGCGCAGGCcuguaGACGGCacgaaguACCGc -3'
miRNA:   3'- aAGUCGUGUCCGcg---UUGCCGc------UGGCa -5'
12327 5' -58.7 NC_003324.1 + 29218 0.72 0.229748
Target:  5'- -gCAGCACuacGGUGCGcucaccaagACGGCGGCUGUu -3'
miRNA:   3'- aaGUCGUGu--CCGCGU---------UGCCGCUGGCA- -5'
12327 5' -58.7 NC_003324.1 + 30315 0.66 0.510728
Target:  5'- gUCGGCGguGGCGUcgcuCGGCGcguGCUGg -3'
miRNA:   3'- aAGUCGUguCCGCGuu--GCCGC---UGGCa -5'
12327 5' -58.7 NC_003324.1 + 30378 0.67 0.449343
Target:  5'- gUCGcUACAGGCauguucgGCGGCuugGGCGACCGUg -3'
miRNA:   3'- aAGUcGUGUCCG-------CGUUG---CCGCUGGCA- -5'
12327 5' -58.7 NC_003324.1 + 30762 0.67 0.412296
Target:  5'- --aAGCACGGGCGCGGucCuGCG-CCGUa -3'
miRNA:   3'- aagUCGUGUCCGCGUU--GcCGCuGGCA- -5'
12327 5' -58.7 NC_003324.1 + 31309 0.66 0.480059
Target:  5'- -gCGGCGCuGGCGCuGGCGGgGGCauCGUc -3'
miRNA:   3'- aaGUCGUGuCCGCG-UUGCCgCUG--GCA- -5'
12327 5' -58.7 NC_003324.1 + 35230 0.66 0.489168
Target:  5'- -aCGGCGCcgaaggugacgaAGGCGCugaggucAACGGCGACgGc -3'
miRNA:   3'- aaGUCGUG------------UCCGCG-------UUGCCGCUGgCa -5'
12327 5' -58.7 NC_003324.1 + 35579 0.68 0.402193
Target:  5'- gUCGGCGCuGGaagcagcCGguACGGCGAUCGc -3'
miRNA:   3'- aAGUCGUGuCC-------GCguUGCCGCUGGCa -5'
12327 5' -58.7 NC_003324.1 + 36528 0.67 0.46012
Target:  5'- --aAGCGCcgcGGGCGCGACGGCauGCCc- -3'
miRNA:   3'- aagUCGUG---UCCGCGUUGCCGc-UGGca -5'
12327 5' -58.7 NC_003324.1 + 37454 0.67 0.439667
Target:  5'- -aCAGCGCGGGauggaGCcggggucuccgggAugGGCGACUGg -3'
miRNA:   3'- aaGUCGUGUCCg----CG-------------UugCCGCUGGCa -5'
12327 5' -58.7 NC_003324.1 + 38093 0.68 0.394045
Target:  5'- --aAGCGCGucGGCGCcguGCuGGUGACCGUu -3'
miRNA:   3'- aagUCGUGU--CCGCGu--UG-CCGCUGGCA- -5'
12327 5' -58.7 NC_003324.1 + 39170 0.74 0.162715
Target:  5'- aUCGGCACcuucuGGCGCAgccACGGCGgcaACCGa -3'
miRNA:   3'- aAGUCGUGu----CCGCGU---UGCCGC---UGGCa -5'
12327 5' -58.7 NC_003324.1 + 39776 0.71 0.241925
Target:  5'- --gGGCACAuGGCGCGACGuGCGGCa-- -3'
miRNA:   3'- aagUCGUGU-CCGCGUUGC-CGCUGgca -5'
12327 5' -58.7 NC_003324.1 + 41561 0.67 0.46012
Target:  5'- -gCGGCGCGGGCcuguuccucGCA--GGUGGCCGUc -3'
miRNA:   3'- aaGUCGUGUCCG---------CGUugCCGCUGGCA- -5'
12327 5' -58.7 NC_003324.1 + 47435 0.66 0.510728
Target:  5'- -cCAGCACAGuaGCGAUaGCGAUCa- -3'
miRNA:   3'- aaGUCGUGUCcgCGUUGcCGCUGGca -5'
12327 5' -58.7 NC_003324.1 + 47615 0.66 0.510728
Target:  5'- cUUUAcCACGccGCGCAugACGGCGACCGg -3'
miRNA:   3'- -AAGUcGUGUc-CGCGU--UGCCGCUGGCa -5'
12327 5' -58.7 NC_003324.1 + 47737 0.68 0.384232
Target:  5'- -cCAGCGCAccGGCGUgccacagcucgacGAUGGCGGCCc- -3'
miRNA:   3'- aaGUCGUGU--CCGCG-------------UUGCCGCUGGca -5'
12327 5' -58.7 NC_003324.1 + 49095 0.7 0.303451
Target:  5'- --aAGCAUGGcCGCGAgGGCGGCCGa -3'
miRNA:   3'- aagUCGUGUCcGCGUUgCCGCUGGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.