miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12327 5' -58.7 NC_003324.1 + 35579 0.68 0.402193
Target:  5'- gUCGGCGCuGGaagcagcCGguACGGCGAUCGc -3'
miRNA:   3'- aAGUCGUGuCC-------GCguUGCCGCUGGCa -5'
12327 5' -58.7 NC_003324.1 + 53184 0.68 0.403105
Target:  5'- -aCAGCAUgugguGGGUgGUAGCuGGCGGCCGg -3'
miRNA:   3'- aaGUCGUG-----UCCG-CGUUG-CCGCUGGCa -5'
12327 5' -58.7 NC_003324.1 + 52947 0.67 0.411371
Target:  5'- cUCAuGCGCuugagcuuaucgaAGuCGUAGCGGCGGCCGUu -3'
miRNA:   3'- aAGU-CGUG-------------UCcGCGUUGCCGCUGGCA- -5'
12327 5' -58.7 NC_003324.1 + 30762 0.67 0.412296
Target:  5'- --aAGCACGGGCGCGGucCuGCG-CCGUa -3'
miRNA:   3'- aagUCGUGUCCGCGUU--GcCGCuGGCA- -5'
12327 5' -58.7 NC_003324.1 + 16324 0.67 0.412296
Target:  5'- -gCAGaCGCAGcggucCGCGACGGCGuuGCCGUc -3'
miRNA:   3'- aaGUC-GUGUCc----GCGUUGCCGC--UGGCA- -5'
12327 5' -58.7 NC_003324.1 + 24166 0.67 0.431061
Target:  5'- aUCAGCGCcaccguGGCGCAGC-GC-ACCGg -3'
miRNA:   3'- aAGUCGUGu-----CCGCGUUGcCGcUGGCa -5'
12327 5' -58.7 NC_003324.1 + 37454 0.67 0.439667
Target:  5'- -aCAGCGCGGGauggaGCcggggucuccgggAugGGCGACUGg -3'
miRNA:   3'- aaGUCGUGUCCg----CG-------------UugCCGCUGGCa -5'
12327 5' -58.7 NC_003324.1 + 27461 0.67 0.440629
Target:  5'- cUCAGCGCAGGCcuguaGACGGCacgaaguACCGc -3'
miRNA:   3'- aAGUCGUGUCCGcg---UUGCCGc------UGGCa -5'
12327 5' -58.7 NC_003324.1 + 30378 0.67 0.449343
Target:  5'- gUCGcUACAGGCauguucgGCGGCuugGGCGACCGUg -3'
miRNA:   3'- aAGUcGUGUCCG-------CGUUG---CCGCUGGCA- -5'
12327 5' -58.7 NC_003324.1 + 36528 0.67 0.46012
Target:  5'- --aAGCGCcgcGGGCGCGACGGCauGCCc- -3'
miRNA:   3'- aagUCGUG---UCCGCGUUGCCGc-UGGca -5'
12327 5' -58.7 NC_003324.1 + 41561 0.67 0.46012
Target:  5'- -gCGGCGCGGGCcuguuccucGCA--GGUGGCCGUc -3'
miRNA:   3'- aaGUCGUGUCCG---------CGUugCCGCUGGCA- -5'
12327 5' -58.7 NC_003324.1 + 24592 0.66 0.470036
Target:  5'- -cCAGCGCAGGauCAuCGG-GGCCGUa -3'
miRNA:   3'- aaGUCGUGUCCgcGUuGCCgCUGGCA- -5'
12327 5' -58.7 NC_003324.1 + 21086 0.66 0.470036
Target:  5'- uUUCGGCGC-GGC-CAucauuGCGGCGAuCCGa -3'
miRNA:   3'- -AAGUCGUGuCCGcGU-----UGCCGCU-GGCa -5'
12327 5' -58.7 NC_003324.1 + 31309 0.66 0.480059
Target:  5'- -gCGGCGCuGGCGCuGGCGGgGGCauCGUc -3'
miRNA:   3'- aaGUCGUGuCCGCG-UUGCCgCUG--GCA- -5'
12327 5' -58.7 NC_003324.1 + 3269 0.66 0.480059
Target:  5'- --aAGCGgAGG-GCGGCGGCaACCGUc -3'
miRNA:   3'- aagUCGUgUCCgCGUUGCCGcUGGCA- -5'
12327 5' -58.7 NC_003324.1 + 35230 0.66 0.489168
Target:  5'- -aCGGCGCcgaaggugacgaAGGCGCugaggucAACGGCGACgGc -3'
miRNA:   3'- aaGUCGUG------------UCCGCG-------UUGCCGCUGgCa -5'
12327 5' -58.7 NC_003324.1 + 25253 0.66 0.490186
Target:  5'- gUgAGCu---GCGCGACGGCGcCCGUa -3'
miRNA:   3'- aAgUCGugucCGCGUUGCCGCuGGCA- -5'
12327 5' -58.7 NC_003324.1 + 2181 0.66 0.490186
Target:  5'- -aCAGCGCAGGaGCugcucACGG-GGCCGa -3'
miRNA:   3'- aaGUCGUGUCCgCGu----UGCCgCUGGCa -5'
12327 5' -58.7 NC_003324.1 + 16124 0.66 0.50041
Target:  5'- gUCcuGCGCAgGGCGCuucgguAGCGGgGGCCGc -3'
miRNA:   3'- aAGu-CGUGU-CCGCG------UUGCCgCUGGCa -5'
12327 5' -58.7 NC_003324.1 + 20610 0.66 0.510728
Target:  5'- -cCGGCGCugauGGGCGCuuGCGGuCGGCgGg -3'
miRNA:   3'- aaGUCGUG----UCCGCGu-UGCC-GCUGgCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.