miRNA display CGI


Results 21 - 40 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12327 5' -58.7 NC_003324.1 + 30315 0.66 0.510728
Target:  5'- gUCGGCGguGGCGUcgcuCGGCGcguGCUGg -3'
miRNA:   3'- aAGUCGUguCCGCGuu--GCCGC---UGGCa -5'
12327 5' -58.7 NC_003324.1 + 29218 0.72 0.229748
Target:  5'- -gCAGCACuacGGUGCGcucaccaagACGGCGGCUGUu -3'
miRNA:   3'- aaGUCGUGu--CCGCGU---------UGCCGCUGGCA- -5'
12327 5' -58.7 NC_003324.1 + 27461 0.67 0.440629
Target:  5'- cUCAGCGCAGGCcuguaGACGGCacgaaguACCGc -3'
miRNA:   3'- aAGUCGUGUCCGcg---UUGCCGc------UGGCa -5'
12327 5' -58.7 NC_003324.1 + 25698 0.74 0.149973
Target:  5'- aUCAGCagccguGCcGGCGCAGCaGCGGCCGa -3'
miRNA:   3'- aAGUCG------UGuCCGCGUUGcCGCUGGCa -5'
12327 5' -58.7 NC_003324.1 + 25253 0.66 0.490186
Target:  5'- gUgAGCu---GCGCGACGGCGcCCGUa -3'
miRNA:   3'- aAgUCGugucCGCGUUGCCGCuGGCA- -5'
12327 5' -58.7 NC_003324.1 + 24592 0.66 0.470036
Target:  5'- -cCAGCGCAGGauCAuCGG-GGCCGUa -3'
miRNA:   3'- aaGUCGUGUCCgcGUuGCCgCUGGCA- -5'
12327 5' -58.7 NC_003324.1 + 24166 0.67 0.431061
Target:  5'- aUCAGCGCcaccguGGCGCAGC-GC-ACCGg -3'
miRNA:   3'- aAGUCGUGu-----CCGCGUUGcCGcUGGCa -5'
12327 5' -58.7 NC_003324.1 + 23546 0.73 0.196295
Target:  5'- -aCAGCguggcgGCGGGCGCGcuCGGCGACgGUa -3'
miRNA:   3'- aaGUCG------UGUCCGCGUu-GCCGCUGgCA- -5'
12327 5' -58.7 NC_003324.1 + 21163 0.74 0.154116
Target:  5'- -gCAGCAC--GCGCcGCGGCGGCCGa -3'
miRNA:   3'- aaGUCGUGucCGCGuUGCCGCUGGCa -5'
12327 5' -58.7 NC_003324.1 + 21086 0.66 0.470036
Target:  5'- uUUCGGCGC-GGC-CAucauuGCGGCGAuCCGa -3'
miRNA:   3'- -AAGUCGUGuCCGcGU-----UGCCGCU-GGCa -5'
12327 5' -58.7 NC_003324.1 + 20610 0.66 0.510728
Target:  5'- -cCGGCGCugauGGGCGCuuGCGGuCGGCgGg -3'
miRNA:   3'- aaGUCGUG----UCCGCGu-UGCC-GCUGgCa -5'
12327 5' -58.7 NC_003324.1 + 19473 0.71 0.235771
Target:  5'- cUCAuGCAC-GGCGCGACGcGCG-CCGg -3'
miRNA:   3'- aAGU-CGUGuCCGCGUUGC-CGCuGGCa -5'
12327 5' -58.7 NC_003324.1 + 17556 0.68 0.376325
Target:  5'- cUCAGaCGCucGGCGCGACGGCagGACUu- -3'
miRNA:   3'- aAGUC-GUGu-CCGCGUUGCCG--CUGGca -5'
12327 5' -58.7 NC_003324.1 + 16324 0.67 0.412296
Target:  5'- -gCAGaCGCAGcggucCGCGACGGCGuuGCCGUc -3'
miRNA:   3'- aaGUC-GUGUCc----GCGUUGCCGC--UGGCA- -5'
12327 5' -58.7 NC_003324.1 + 16124 0.66 0.50041
Target:  5'- gUCcuGCGCAgGGCGCuucgguAGCGGgGGCCGc -3'
miRNA:   3'- aAGu-CGUGU-CCGCG------UUGCCgCUGGCa -5'
12327 5' -58.7 NC_003324.1 + 14601 0.78 0.076697
Target:  5'- -gCGGCGCAGGCGguAgcgUGGCGGCCGg -3'
miRNA:   3'- aaGUCGUGUCCGCguU---GCCGCUGGCa -5'
12327 5' -58.7 NC_003324.1 + 13177 0.68 0.359151
Target:  5'- gUCAGCG-AGGCuGCGuCGGCGGCgGUc -3'
miRNA:   3'- aAGUCGUgUCCG-CGUuGCCGCUGgCA- -5'
12327 5' -58.7 NC_003324.1 + 8329 0.68 0.385118
Target:  5'- gUCGGCGCu--CGUuACGGUGACCGUc -3'
miRNA:   3'- aAGUCGUGuccGCGuUGCCGCUGGCA- -5'
12327 5' -58.7 NC_003324.1 + 8185 1.05 0.000761
Target:  5'- uUUCAGCACAGGCGCAACGGCGACCGUg -3'
miRNA:   3'- -AAGUCGUGUCCGCGUUGCCGCUGGCA- -5'
12327 5' -58.7 NC_003324.1 + 6735 0.66 0.510728
Target:  5'- aUCGGUAaAGGUGgcCAACGGCG-CCGa -3'
miRNA:   3'- aAGUCGUgUCCGC--GUUGCCGCuGGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.