miRNA: 3'- aagUCGUG---UCCGCGUUGCCGc-UGGca -5'
miRNA: 3'- aAGUcGUGUCCG-------CGUUG---CCGCUGGCA- -5'
miRNA: 3'- aAGUCGUGUCCGcg---UUGCCGc------UGGCa -5'
miRNA: 3'- aAGUCGUGu-----CCGCGUUGcCGcUGGCa -5'
miRNA: 3'- aAGUCGUguCCGCGuu--GCCGC---UGGCa -5'
Results 41 - 45 of 45 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 12327 | 5' | -58.7 | NC_003324.1 | + | 36528 | 0.67 | 0.46012 |
|
Target: 5'- --aAGCGCcgcGGGCGCGACGGCauGCCc- -3' miRNA: 3'- aagUCGUG---UCCGCGUUGCCGc-UGGca -5' |
|||||||
| 12327 | 5' | -58.7 | NC_003324.1 | + | 30378 | 0.67 | 0.449343 |
|
Target: 5'- gUCGcUACAGGCauguucgGCGGCuugGGCGACCGUg -3' miRNA: 3'- aAGUcGUGUCCG-------CGUUG---CCGCUGGCA- -5' |
|||||||
| 12327 | 5' | -58.7 | NC_003324.1 | + | 27461 | 0.67 | 0.440629 |
|
Target: 5'- cUCAGCGCAGGCcuguaGACGGCacgaaguACCGc -3' miRNA: 3'- aAGUCGUGUCCGcg---UUGCCGc------UGGCa -5' |
|||||||
| 12327 | 5' | -58.7 | NC_003324.1 | + | 24166 | 0.67 | 0.431061 |
|
Target: 5'- aUCAGCGCcaccguGGCGCAGC-GC-ACCGg -3' miRNA: 3'- aAGUCGUGu-----CCGCGUUGcCGcUGGCa -5' |
|||||||
| 12327 | 5' | -58.7 | NC_003324.1 | + | 30315 | 0.66 | 0.510728 |
|
Target: 5'- gUCGGCGguGGCGUcgcuCGGCGcguGCUGg -3' miRNA: 3'- aAGUCGUguCCGCGuu--GCCGC---UGGCa -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home