Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12328 | 3' | -64 | NC_003324.1 | + | 622 | 0.67 | 0.272425 |
Target: 5'- aGGCCUgGCaGCUGggcuugccauucaCCAGCGCGUUGa -3' miRNA: 3'- gCCGGGgUG-CGGCg------------GGUCGCGCAACc -5' |
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12328 | 3' | -64 | NC_003324.1 | + | 3215 | 0.72 | 0.123146 |
Target: 5'- aGGCCCUcguaaaaaACGagaaCGCCCAGCGCGa--- -3' miRNA: 3'- gCCGGGG--------UGCg---GCGGGUCGCGCaacc -5' |
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12328 | 3' | -64 | NC_003324.1 | + | 6143 | 0.68 | 0.243947 |
Target: 5'- gCGGacugaCCCGCGCCGCCUGGaauGCGcUGc -3' miRNA: 3'- -GCCg----GGGUGCGGCGGGUCg--CGCaACc -5' |
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12328 | 3' | -64 | NC_003324.1 | + | 7384 | 0.66 | 0.346497 |
Target: 5'- -uGCCCgCACGCUGCCCGGCu------ -3' miRNA: 3'- gcCGGG-GUGCGGCGGGUCGcgcaacc -5' |
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12328 | 3' | -64 | NC_003324.1 | + | 9742 | 1.09 | 0.000194 |
Target: 5'- cCGGCCCCACGCCGCCCAGCGCGUUGGc -3' miRNA: 3'- -GCCGGGGUGCGGCGGGUCGCGCAACC- -5' |
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12328 | 3' | -64 | NC_003324.1 | + | 9920 | 0.66 | 0.346497 |
Target: 5'- aCGGUUCCuGCGCCGCUCAuucCGUuUUGGa -3' miRNA: 3'- -GCCGGGG-UGCGGCGGGUc--GCGcAACC- -5' |
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12328 | 3' | -64 | NC_003324.1 | + | 16214 | 0.68 | 0.243947 |
Target: 5'- gCGGCCCC-CGCuaccgaagCGCCCuGCGCa--GGa -3' miRNA: 3'- -GCCGGGGuGCG--------GCGGGuCGCGcaaCC- -5' |
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12328 | 3' | -64 | NC_003324.1 | + | 21526 | 0.67 | 0.267287 |
Target: 5'- aCGGCCgCCACGgCGCaucgaugugaugCAGCGCGacgaggcgguuUUGGa -3' miRNA: 3'- -GCCGG-GGUGCgGCGg-----------GUCGCGC-----------AACC- -5' |
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12328 | 3' | -64 | NC_003324.1 | + | 22013 | 0.66 | 0.34572 |
Target: 5'- uGGCCCgCAUccacaagaaguggGaaGCCCAGCGCGg--- -3' miRNA: 3'- gCCGGG-GUG-------------CggCGGGUCGCGCaacc -5' |
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12328 | 3' | -64 | NC_003324.1 | + | 22598 | 0.68 | 0.24992 |
Target: 5'- gCGGCCuUUugGCUGCCUGcCGCGUUGc -3' miRNA: 3'- -GCCGG-GGugCGGCGGGUcGCGCAACc -5' |
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12328 | 3' | -64 | NC_003324.1 | + | 24078 | 0.72 | 0.116855 |
Target: 5'- -aGCCCUAcCGCCGCCCuaccAGCGCGUc-- -3' miRNA: 3'- gcCGGGGU-GCGGCGGG----UCGCGCAacc -5' |
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12328 | 3' | -64 | NC_003324.1 | + | 24920 | 0.68 | 0.24992 |
Target: 5'- -cGCCagCACGCCGCCCGGuCGCa---- -3' miRNA: 3'- gcCGGg-GUGCGGCGGGUC-GCGcaacc -5' |
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12328 | 3' | -64 | NC_003324.1 | + | 27884 | 0.66 | 0.309189 |
Target: 5'- gGGCUCgGCGCCaucaGUCCGaCGaCGUUGGg -3' miRNA: 3'- gCCGGGgUGCGG----CGGGUcGC-GCAACC- -5' |
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12328 | 3' | -64 | NC_003324.1 | + | 28216 | 0.7 | 0.176672 |
Target: 5'- uCGGCCgCAU-CCGCCuUGGCGgGUUGGa -3' miRNA: 3'- -GCCGGgGUGcGGCGG-GUCGCgCAACC- -5' |
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12328 | 3' | -64 | NC_003324.1 | + | 28627 | 0.7 | 0.190563 |
Target: 5'- uGGCCCggaucguugCGgGCCGCCUugucGCGCGUcgUGGu -3' miRNA: 3'- gCCGGG---------GUgCGGCGGGu---CGCGCA--ACC- -5' |
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12328 | 3' | -64 | NC_003324.1 | + | 28928 | 0.66 | 0.309189 |
Target: 5'- cCGGCUCCugcuuuggcgUGCCGCCUGGCGCu---- -3' miRNA: 3'- -GCCGGGGu---------GCGGCGGGUCGCGcaacc -5' |
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12328 | 3' | -64 | NC_003324.1 | + | 29471 | 0.73 | 0.107978 |
Target: 5'- aCGGCCgCCugGCUG-CgGGCGCGUcGGg -3' miRNA: 3'- -GCCGG-GGugCGGCgGgUCGCGCAaCC- -5' |
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12328 | 3' | -64 | NC_003324.1 | + | 30019 | 0.68 | 0.243947 |
Target: 5'- -cGCCCCuCGcCCGUCCGGaC-CGUUGGg -3' miRNA: 3'- gcCGGGGuGC-GGCGGGUC-GcGCAACC- -5' |
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12328 | 3' | -64 | NC_003324.1 | + | 30314 | 0.7 | 0.172246 |
Target: 5'- uCGGCggUgGCGUCGCUCGGCGCGUgcUGGc -3' miRNA: 3'- -GCCGg-GgUGCGGCGGGUCGCGCA--ACC- -5' |
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12328 | 3' | -64 | NC_003324.1 | + | 31229 | 0.66 | 0.346497 |
Target: 5'- -uGCCCC-CGCCaGCgCCAGCGcCGccGGc -3' miRNA: 3'- gcCGGGGuGCGG-CG-GGUCGC-GCaaCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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