Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12328 | 3' | -64 | NC_003324.1 | + | 55122 | 0.68 | 0.256013 |
Target: 5'- gCGGCagCCCAgccguccgccuUGCCuGCCCGGCGCGa--- -3' miRNA: 3'- -GCCG--GGGU-----------GCGG-CGGGUCGCGCaacc -5' |
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12328 | 3' | -64 | NC_003324.1 | + | 50517 | 0.67 | 0.288315 |
Target: 5'- -aGCCCUGCGagcugcaccaCGCCCAGCGCcUUGcGg -3' miRNA: 3'- gcCGGGGUGCg---------GCGGGUCGCGcAAC-C- -5' |
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12328 | 3' | -64 | NC_003324.1 | + | 47705 | 0.71 | 0.14395 |
Target: 5'- gCGGCCCgGuCGCCGUCauGCGCGgcgUGGu -3' miRNA: 3'- -GCCGGGgU-GCGGCGGguCGCGCa--ACC- -5' |
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12328 | 3' | -64 | NC_003324.1 | + | 43654 | 0.68 | 0.24992 |
Target: 5'- aGGCCCUcaaucggcugACGuuGCgCGGCGUG-UGGc -3' miRNA: 3'- gCCGGGG----------UGCggCGgGUCGCGCaACC- -5' |
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12328 | 3' | -64 | NC_003324.1 | + | 41629 | 0.67 | 0.262228 |
Target: 5'- aGG-CCCGCGCCGCUgucguUAGCGUuuggcacgcguuGUUGGc -3' miRNA: 3'- gCCgGGGUGCGGCGG-----GUCGCG------------CAACC- -5' |
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12328 | 3' | -64 | NC_003324.1 | + | 40241 | 0.67 | 0.295148 |
Target: 5'- uGGCuCCCGCucgacuGCCGCCUugcGUGCGguccgGGg -3' miRNA: 3'- gCCG-GGGUG------CGGCGGGu--CGCGCaa---CC- -5' |
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12328 | 3' | -64 | NC_003324.1 | + | 35395 | 0.67 | 0.288315 |
Target: 5'- uCGGCCgCCGCGCgcaugguuuccuCGCCCucGGUGCGg--- -3' miRNA: 3'- -GCCGG-GGUGCG------------GCGGG--UCGCGCaacc -5' |
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12328 | 3' | -64 | NC_003324.1 | + | 33592 | 0.69 | 0.221234 |
Target: 5'- -cGCCCC-UGCUGCUuugcgCAGCGCGUUGc -3' miRNA: 3'- gcCGGGGuGCGGCGG-----GUCGCGCAACc -5' |
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12328 | 3' | -64 | NC_003324.1 | + | 32381 | 0.66 | 0.316399 |
Target: 5'- gCGGCgCCGCgcagagGCCGUugucgCCAGCGUGUucucUGGc -3' miRNA: 3'- -GCCGgGGUG------CGGCG-----GGUCGCGCA----ACC- -5' |
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12328 | 3' | -64 | NC_003324.1 | + | 32277 | 0.67 | 0.275024 |
Target: 5'- gGGCCUCgaagAUGCCGCgCAcgacGCGCGUcGGc -3' miRNA: 3'- gCCGGGG----UGCGGCGgGU----CGCGCAaCC- -5' |
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12328 | 3' | -64 | NC_003324.1 | + | 31546 | 0.67 | 0.295148 |
Target: 5'- uGGCCgCCACGCgCGCCC-GCG-GUc-- -3' miRNA: 3'- gCCGG-GGUGCG-GCGGGuCGCgCAacc -5' |
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12328 | 3' | -64 | NC_003324.1 | + | 31229 | 0.66 | 0.346497 |
Target: 5'- -uGCCCC-CGCCaGCgCCAGCGcCGccGGc -3' miRNA: 3'- gcCGGGGuGCGG-CG-GGUCGC-GCaaCC- -5' |
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12328 | 3' | -64 | NC_003324.1 | + | 30314 | 0.7 | 0.172246 |
Target: 5'- uCGGCggUgGCGUCGCUCGGCGCGUgcUGGc -3' miRNA: 3'- -GCCGg-GgUGCGGCGGGUCGCGCA--ACC- -5' |
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12328 | 3' | -64 | NC_003324.1 | + | 30019 | 0.68 | 0.243947 |
Target: 5'- -cGCCCCuCGcCCGUCCGGaC-CGUUGGg -3' miRNA: 3'- gcCGGGGuGC-GGCGGGUC-GcGCAACC- -5' |
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12328 | 3' | -64 | NC_003324.1 | + | 29471 | 0.73 | 0.107978 |
Target: 5'- aCGGCCgCCugGCUG-CgGGCGCGUcGGg -3' miRNA: 3'- -GCCGG-GGugCGGCgGgUCGCGCAaCC- -5' |
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12328 | 3' | -64 | NC_003324.1 | + | 28928 | 0.66 | 0.309189 |
Target: 5'- cCGGCUCCugcuuuggcgUGCCGCCUGGCGCu---- -3' miRNA: 3'- -GCCGGGGu---------GCGGCGGGUCGCGcaacc -5' |
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12328 | 3' | -64 | NC_003324.1 | + | 28627 | 0.7 | 0.190563 |
Target: 5'- uGGCCCggaucguugCGgGCCGCCUugucGCGCGUcgUGGu -3' miRNA: 3'- gCCGGG---------GUgCGGCGGGu---CGCGCA--ACC- -5' |
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12328 | 3' | -64 | NC_003324.1 | + | 28216 | 0.7 | 0.176672 |
Target: 5'- uCGGCCgCAU-CCGCCuUGGCGgGUUGGa -3' miRNA: 3'- -GCCGGgGUGcGGCGG-GUCGCgCAACC- -5' |
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12328 | 3' | -64 | NC_003324.1 | + | 27884 | 0.66 | 0.309189 |
Target: 5'- gGGCUCgGCGCCaucaGUCCGaCGaCGUUGGg -3' miRNA: 3'- gCCGGGgUGCGG----CGGGUcGC-GCAACC- -5' |
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12328 | 3' | -64 | NC_003324.1 | + | 24920 | 0.68 | 0.24992 |
Target: 5'- -cGCCagCACGCCGCCCGGuCGCa---- -3' miRNA: 3'- gcCGGg-GUGCGGCGGGUC-GCGcaacc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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