miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12328 3' -64 NC_003324.1 + 30019 0.68 0.243947
Target:  5'- -cGCCCCuCGcCCGUCCGGaC-CGUUGGg -3'
miRNA:   3'- gcCGGGGuGC-GGCGGGUC-GcGCAACC- -5'
12328 3' -64 NC_003324.1 + 16214 0.68 0.243947
Target:  5'- gCGGCCCC-CGCuaccgaagCGCCCuGCGCa--GGa -3'
miRNA:   3'- -GCCGGGGuGCG--------GCGGGuCGCGcaaCC- -5'
12328 3' -64 NC_003324.1 + 33592 0.69 0.221234
Target:  5'- -cGCCCC-UGCUGCUuugcgCAGCGCGUUGc -3'
miRNA:   3'- gcCGGGGuGCGGCGG-----GUCGCGCAACc -5'
12328 3' -64 NC_003324.1 + 28216 0.7 0.176672
Target:  5'- uCGGCCgCAU-CCGCCuUGGCGgGUUGGa -3'
miRNA:   3'- -GCCGGgGUGcGGCGG-GUCGCgCAACC- -5'
12328 3' -64 NC_003324.1 + 28627 0.7 0.190563
Target:  5'- uGGCCCggaucguugCGgGCCGCCUugucGCGCGUcgUGGu -3'
miRNA:   3'- gCCGGG---------GUgCGGCGGGu---CGCGCA--ACC- -5'
12328 3' -64 NC_003324.1 + 30314 0.7 0.172246
Target:  5'- uCGGCggUgGCGUCGCUCGGCGCGUgcUGGc -3'
miRNA:   3'- -GCCGg-GgUGCGGCGGGUCGCGCA--ACC- -5'
12328 3' -64 NC_003324.1 + 47705 0.71 0.14395
Target:  5'- gCGGCCCgGuCGCCGUCauGCGCGgcgUGGu -3'
miRNA:   3'- -GCCGGGgU-GCGGCGGguCGCGCa--ACC- -5'
12328 3' -64 NC_003324.1 + 24078 0.72 0.116855
Target:  5'- -aGCCCUAcCGCCGCCCuaccAGCGCGUc-- -3'
miRNA:   3'- gcCGGGGU-GCGGCGGG----UCGCGCAacc -5'
12328 3' -64 NC_003324.1 + 3215 0.72 0.123146
Target:  5'- aGGCCCUcguaaaaaACGagaaCGCCCAGCGCGa--- -3'
miRNA:   3'- gCCGGGG--------UGCg---GCGGGUCGCGCaacc -5'
12328 3' -64 NC_003324.1 + 29471 0.73 0.107978
Target:  5'- aCGGCCgCCugGCUG-CgGGCGCGUcGGg -3'
miRNA:   3'- -GCCGG-GGugCGGCgGgUCGCGCAaCC- -5'
12328 3' -64 NC_003324.1 + 9742 1.09 0.000194
Target:  5'- cCGGCCCCACGCCGCCCAGCGCGUUGGc -3'
miRNA:   3'- -GCCGGGGUGCGGCGGGUCGCGCAACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.