miRNA display CGI


Results 21 - 31 of 31 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12328 3' -64 NC_003324.1 + 50517 0.67 0.288315
Target:  5'- -aGCCCUGCGagcugcaccaCGCCCAGCGCcUUGcGg -3'
miRNA:   3'- gcCGGGGUGCg---------GCGGGUCGCGcAAC-C- -5'
12328 3' -64 NC_003324.1 + 35395 0.67 0.288315
Target:  5'- uCGGCCgCCGCGCgcaugguuuccuCGCCCucGGUGCGg--- -3'
miRNA:   3'- -GCCGG-GGUGCG------------GCGGG--UCGCGCaacc -5'
12328 3' -64 NC_003324.1 + 40241 0.67 0.295148
Target:  5'- uGGCuCCCGCucgacuGCCGCCUugcGUGCGguccgGGg -3'
miRNA:   3'- gCCG-GGGUG------CGGCGGGu--CGCGCaa---CC- -5'
12328 3' -64 NC_003324.1 + 31546 0.67 0.295148
Target:  5'- uGGCCgCCACGCgCGCCC-GCG-GUc-- -3'
miRNA:   3'- gCCGG-GGUGCG-GCGGGuCGCgCAacc -5'
12328 3' -64 NC_003324.1 + 27884 0.66 0.309189
Target:  5'- gGGCUCgGCGCCaucaGUCCGaCGaCGUUGGg -3'
miRNA:   3'- gCCGGGgUGCGG----CGGGUcGC-GCAACC- -5'
12328 3' -64 NC_003324.1 + 28928 0.66 0.309189
Target:  5'- cCGGCUCCugcuuuggcgUGCCGCCUGGCGCu---- -3'
miRNA:   3'- -GCCGGGGu---------GCGGCGGGUCGCGcaacc -5'
12328 3' -64 NC_003324.1 + 32381 0.66 0.316399
Target:  5'- gCGGCgCCGCgcagagGCCGUugucgCCAGCGUGUucucUGGc -3'
miRNA:   3'- -GCCGgGGUG------CGGCG-----GGUCGCGCA----ACC- -5'
12328 3' -64 NC_003324.1 + 22013 0.66 0.34572
Target:  5'- uGGCCCgCAUccacaagaaguggGaaGCCCAGCGCGg--- -3'
miRNA:   3'- gCCGGG-GUG-------------CggCGGGUCGCGCaacc -5'
12328 3' -64 NC_003324.1 + 31229 0.66 0.346497
Target:  5'- -uGCCCC-CGCCaGCgCCAGCGcCGccGGc -3'
miRNA:   3'- gcCGGGGuGCGG-CG-GGUCGC-GCaaCC- -5'
12328 3' -64 NC_003324.1 + 7384 0.66 0.346497
Target:  5'- -uGCCCgCACGCUGCCCGGCu------ -3'
miRNA:   3'- gcCGGG-GUGCGGCGGGUCGcgcaacc -5'
12328 3' -64 NC_003324.1 + 9920 0.66 0.346497
Target:  5'- aCGGUUCCuGCGCCGCUCAuucCGUuUUGGa -3'
miRNA:   3'- -GCCGGGG-UGCGGCGGGUc--GCGcAACC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.