Results 21 - 31 of 31 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12328 | 3' | -64 | NC_003324.1 | + | 50517 | 0.67 | 0.288315 |
Target: 5'- -aGCCCUGCGagcugcaccaCGCCCAGCGCcUUGcGg -3' miRNA: 3'- gcCGGGGUGCg---------GCGGGUCGCGcAAC-C- -5' |
|||||||
12328 | 3' | -64 | NC_003324.1 | + | 35395 | 0.67 | 0.288315 |
Target: 5'- uCGGCCgCCGCGCgcaugguuuccuCGCCCucGGUGCGg--- -3' miRNA: 3'- -GCCGG-GGUGCG------------GCGGG--UCGCGCaacc -5' |
|||||||
12328 | 3' | -64 | NC_003324.1 | + | 40241 | 0.67 | 0.295148 |
Target: 5'- uGGCuCCCGCucgacuGCCGCCUugcGUGCGguccgGGg -3' miRNA: 3'- gCCG-GGGUG------CGGCGGGu--CGCGCaa---CC- -5' |
|||||||
12328 | 3' | -64 | NC_003324.1 | + | 31546 | 0.67 | 0.295148 |
Target: 5'- uGGCCgCCACGCgCGCCC-GCG-GUc-- -3' miRNA: 3'- gCCGG-GGUGCG-GCGGGuCGCgCAacc -5' |
|||||||
12328 | 3' | -64 | NC_003324.1 | + | 27884 | 0.66 | 0.309189 |
Target: 5'- gGGCUCgGCGCCaucaGUCCGaCGaCGUUGGg -3' miRNA: 3'- gCCGGGgUGCGG----CGGGUcGC-GCAACC- -5' |
|||||||
12328 | 3' | -64 | NC_003324.1 | + | 28928 | 0.66 | 0.309189 |
Target: 5'- cCGGCUCCugcuuuggcgUGCCGCCUGGCGCu---- -3' miRNA: 3'- -GCCGGGGu---------GCGGCGGGUCGCGcaacc -5' |
|||||||
12328 | 3' | -64 | NC_003324.1 | + | 32381 | 0.66 | 0.316399 |
Target: 5'- gCGGCgCCGCgcagagGCCGUugucgCCAGCGUGUucucUGGc -3' miRNA: 3'- -GCCGgGGUG------CGGCG-----GGUCGCGCA----ACC- -5' |
|||||||
12328 | 3' | -64 | NC_003324.1 | + | 22013 | 0.66 | 0.34572 |
Target: 5'- uGGCCCgCAUccacaagaaguggGaaGCCCAGCGCGg--- -3' miRNA: 3'- gCCGGG-GUG-------------CggCGGGUCGCGCaacc -5' |
|||||||
12328 | 3' | -64 | NC_003324.1 | + | 31229 | 0.66 | 0.346497 |
Target: 5'- -uGCCCC-CGCCaGCgCCAGCGcCGccGGc -3' miRNA: 3'- gcCGGGGuGCGG-CG-GGUCGC-GCaaCC- -5' |
|||||||
12328 | 3' | -64 | NC_003324.1 | + | 7384 | 0.66 | 0.346497 |
Target: 5'- -uGCCCgCACGCUGCCCGGCu------ -3' miRNA: 3'- gcCGGG-GUGCGGCGGGUCGcgcaacc -5' |
|||||||
12328 | 3' | -64 | NC_003324.1 | + | 9920 | 0.66 | 0.346497 |
Target: 5'- aCGGUUCCuGCGCCGCUCAuucCGUuUUGGa -3' miRNA: 3'- -GCCGGGG-UGCGGCGGGUc--GCGcAACC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home