miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12333 3' -56.4 NC_003324.1 + 21379 0.7 0.427948
Target:  5'- cCUUaGCCUCgAUCGUCuGCCAcGUCCGCg -3'
miRNA:   3'- -GAAcCGGAG-UAGUGGuCGGU-CAGGCG- -5'
12333 3' -56.4 NC_003324.1 + 52237 0.69 0.447221
Target:  5'- --gGGCU--AUCACuCGGCCAGUUCGUc -3'
miRNA:   3'- gaaCCGGagUAGUG-GUCGGUCAGGCG- -5'
12333 3' -56.4 NC_003324.1 + 43548 0.69 0.457037
Target:  5'- --aGGCUUCcagCAUCAGCCAcacgCCGCg -3'
miRNA:   3'- gaaCCGGAGua-GUGGUCGGUca--GGCG- -5'
12333 3' -56.4 NC_003324.1 + 29739 0.69 0.477008
Target:  5'- -aUGGCCUCAUCGCCuucguacGCCucgaUGCg -3'
miRNA:   3'- gaACCGGAGUAGUGGu------CGGucagGCG- -5'
12333 3' -56.4 NC_003324.1 + 54297 0.69 0.477008
Target:  5'- --aGGCCUgCGUCugC-GCC-GUCUGCa -3'
miRNA:   3'- gaaCCGGA-GUAGugGuCGGuCAGGCG- -5'
12333 3' -56.4 NC_003324.1 + 7733 0.68 0.518176
Target:  5'- --cGGCCgCAUgGCCuGCCuauGUCCGa -3'
miRNA:   3'- gaaCCGGaGUAgUGGuCGGu--CAGGCg -5'
12333 3' -56.4 NC_003324.1 + 31076 0.68 0.518176
Target:  5'- --cGGCCUgAUUGuCCGuGCCGGUCCuuGCg -3'
miRNA:   3'- gaaCCGGAgUAGU-GGU-CGGUCAGG--CG- -5'
12333 3' -56.4 NC_003324.1 + 19434 0.68 0.549954
Target:  5'- cCUUGGCCUUGUCcuuACCGGCaaagCCGa -3'
miRNA:   3'- -GAACCGGAGUAG---UGGUCGgucaGGCg -5'
12333 3' -56.4 NC_003324.1 + 11218 0.67 0.604094
Target:  5'- -aUGGCCUaCAUCGCCGGaaauggagaUCAG-CCGg -3'
miRNA:   3'- gaACCGGA-GUAGUGGUC---------GGUCaGGCg -5'
12333 3' -56.4 NC_003324.1 + 11117 0.67 0.613933
Target:  5'- -aUGGCCUg--CGCUauGGCCcgaccuuGGUCCGCu -3'
miRNA:   3'- gaACCGGAguaGUGG--UCGG-------UCAGGCG- -5'
12333 3' -56.4 NC_003324.1 + 3045 0.67 0.615028
Target:  5'- --gGGCCUguUCGCgGGCgCGGUcucucucaauggCCGCa -3'
miRNA:   3'- gaaCCGGAguAGUGgUCG-GUCA------------GGCG- -5'
12333 3' -56.4 NC_003324.1 + 29581 0.67 0.615028
Target:  5'- --aGGCCUCGUCGCUcgauuccucgGGCagaacGUCCuGCa -3'
miRNA:   3'- gaaCCGGAGUAGUGG----------UCGgu---CAGG-CG- -5'
12333 3' -56.4 NC_003324.1 + 6009 0.66 0.625976
Target:  5'- ---aGCCgcaAUUGCCGcCCAGUCCGCu -3'
miRNA:   3'- gaacCGGag-UAGUGGUcGGUCAGGCG- -5'
12333 3' -56.4 NC_003324.1 + 43909 0.66 0.625976
Target:  5'- gUUGaGCCUUuggCGCCGGCaccgAGcCCGCa -3'
miRNA:   3'- gAAC-CGGAGua-GUGGUCGg---UCaGGCG- -5'
12333 3' -56.4 NC_003324.1 + 43034 0.73 0.26501
Target:  5'- --gGGCCUgCAUUGCCGGUaaCGGUUCGCg -3'
miRNA:   3'- gaaCCGGA-GUAGUGGUCG--GUCAGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.