miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12341 5' -53.2 NC_003324.1 + 57047 0.69 0.663602
Target:  5'- cUCGGGuUGGGCUGggGAGC-GG-CGGCg -3'
miRNA:   3'- -AGUUC-GUCCGGCuuCUUGaCCuGCUG- -5'
12341 5' -53.2 NC_003324.1 + 56489 0.67 0.781996
Target:  5'- gCAAugGGGgCGAGGAACggaaGGGCGGCu -3'
miRNA:   3'- aGUUcgUCCgGCUUCUUGa---CCUGCUG- -5'
12341 5' -53.2 NC_003324.1 + 55033 0.69 0.652422
Target:  5'- cCGGGCAGGCaaggCGGAcGGCUGGgcugccGCGACg -3'
miRNA:   3'- aGUUCGUCCG----GCUUcUUGACC------UGCUG- -5'
12341 5' -53.2 NC_003324.1 + 49355 0.7 0.585302
Target:  5'- cCAacAGCGGuGUCGAcGAuCUGGGCGACc -3'
miRNA:   3'- aGU--UCGUC-CGGCUuCUuGACCUGCUG- -5'
12341 5' -53.2 NC_003324.1 + 49347 0.66 0.830332
Target:  5'- ---cGCAGG-CGAGGAuCUGGACacgaaGACg -3'
miRNA:   3'- aguuCGUCCgGCUUCUuGACCUG-----CUG- -5'
12341 5' -53.2 NC_003324.1 + 44152 0.68 0.729639
Target:  5'- gCAAGCAGGacaCCGAcGAGC-GGAUGGa -3'
miRNA:   3'- aGUUCGUCC---GGCUuCUUGaCCUGCUg -5'
12341 5' -53.2 NC_003324.1 + 42551 0.67 0.781996
Target:  5'- gCAAGCucaAGGUgaAAGAAUgGGACGACa -3'
miRNA:   3'- aGUUCG---UCCGgcUUCUUGaCCUGCUG- -5'
12341 5' -53.2 NC_003324.1 + 39784 0.66 0.830332
Target:  5'- ---cGCAGGCCGGGcacaUGGcGCGACg -3'
miRNA:   3'- aguuCGUCCGGCUUcuugACC-UGCUG- -5'
12341 5' -53.2 NC_003324.1 + 39751 0.69 0.652422
Target:  5'- aUCAAGCAcgauGUCGAGGAAgaGGGCGcGCu -3'
miRNA:   3'- -AGUUCGUc---CGGCUUCUUgaCCUGC-UG- -5'
12341 5' -53.2 NC_003324.1 + 35455 0.66 0.801894
Target:  5'- cCGAGCAGGCUGcAGcAGCacaGGcCGACc -3'
miRNA:   3'- aGUUCGUCCGGCuUC-UUGa--CCuGCUG- -5'
12341 5' -53.2 NC_003324.1 + 34856 0.66 0.821055
Target:  5'- aUCGAGCAGGCCcuugacgauuuGAAGGAUcagcGGACc-- -3'
miRNA:   3'- -AGUUCGUCCGG-----------CUUCUUGa---CCUGcug -5'
12341 5' -53.2 NC_003324.1 + 32166 0.66 0.801894
Target:  5'- aCGAGCcgaggcgcagcgAGGCCGAAGAGCcauuUGACg -3'
miRNA:   3'- aGUUCG------------UCCGGCUUCUUGaccuGCUG- -5'
12341 5' -53.2 NC_003324.1 + 30801 0.73 0.417592
Target:  5'- gCAGGC-GGCCGAcgccaAGAAUUGGugGgACa -3'
miRNA:   3'- aGUUCGuCCGGCU-----UCUUGACCugC-UG- -5'
12341 5' -53.2 NC_003324.1 + 30491 0.66 0.791036
Target:  5'- cCGAGCAGGCCcucGGAaACUGcgccugcgaccguGGCGACc -3'
miRNA:   3'- aGUUCGUCCGGcu-UCU-UGAC-------------CUGCUG- -5'
12341 5' -53.2 NC_003324.1 + 29876 0.69 0.627773
Target:  5'- aUCAGGCAGGgUGGAuacggcgcgaucuucGGcgcgcugcuggccauGCUGGACGGCg -3'
miRNA:   3'- -AGUUCGUCCgGCUU---------------CU---------------UGACCUGCUG- -5'
12341 5' -53.2 NC_003324.1 + 28523 0.69 0.618809
Target:  5'- --cGGCAacGGCUGggGAACgacaGACGACa -3'
miRNA:   3'- aguUCGU--CCGGCuuCUUGac--CUGCUG- -5'
12341 5' -53.2 NC_003324.1 + 26229 0.67 0.7718
Target:  5'- ---uGCAGGCCGccAGcAGCgGGACGAg -3'
miRNA:   3'- aguuCGUCCGGCu-UC-UUGaCCUGCUg -5'
12341 5' -53.2 NC_003324.1 + 24556 0.69 0.663602
Target:  5'- -aGAGCAGuGCCgGAAGAucgucaccGCUgcGGGCGACc -3'
miRNA:   3'- agUUCGUC-CGG-CUUCU--------UGA--CCUGCUG- -5'
12341 5' -53.2 NC_003324.1 + 21762 0.71 0.552158
Target:  5'- cUCu-GCAGGgCGAGGAACUcguccGGCGACa -3'
miRNA:   3'- -AGuuCGUCCgGCUUCUUGAc----CUGCUG- -5'
12341 5' -53.2 NC_003324.1 + 21539 0.68 0.68586
Target:  5'- aCGAGCucuauGCCGAAGAuCcGGAUGGCu -3'
miRNA:   3'- aGUUCGuc---CGGCUUCUuGaCCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.